Variant report

Variant	rs28896544
Chromosome Location	chr7:140360027-140360028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1106846	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28828674	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2908235	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930326	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930328	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930329	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930330	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930332	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968560	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969644	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6977496	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7785630	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28896544	ADCK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140357000-140361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:140357200-140360200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:140357400-140361200	Weak transcription	Placenta	Placenta
4	chr7:140357400-140361200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:140359600-140360200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:140359600-140360200	Enhancers	Fetal Muscle Leg	muscle
7	chr7:140359600-140360200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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