Variant report

Variant	rs2930326
Chromosome Location	chr7:140357141-140357142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140352705..140358390-chr7:140370477..140374283,7	MCF-7	breast:
2	chr7:140178651..140180192-chr7:140355165..140357429,2	MCF-7	breast:
3	chr7:140356234..140358588-chr7:140371842..140375478,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction
ENSG00000146966	Chromatin interaction
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1106846	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977567	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28828674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28896544	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907951	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2907952	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2908235	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930316	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2930317	0.83[ASN][1000 genomes]
rs2930320	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930323	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2930325	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2930328	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930329	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930330	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930332	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2968546	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2968554	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2968556	0.81[AMR][1000 genomes]
rs2968560	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6969644	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802537	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140351800-140358000	Weak transcription	Gastric	stomach
2	chr7:140355400-140357400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:140355400-140358400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:140355600-140357400	Enhancers	Placenta	Placenta
5	chr7:140355600-140357400	Enhancers	Stomach Mucosa	stomach
6	chr7:140355600-140357600	Enhancers	Fetal Muscle Leg	muscle
7	chr7:140355800-140357200	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:140355800-140357200	Enhancers	Esophagus	oesophagus
9	chr7:140355800-140357200	Enhancers	Fetal Muscle Trunk	muscle
10	chr7:140355800-140357200	Enhancers	Left Ventricle	heart
11	chr7:140355800-140357400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:140356000-140357200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:140356000-140357200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:140356000-140357200	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:140356000-140357200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr7:140356000-140357200	Enhancers	Brain Angular Gyrus	brain
17	chr7:140356000-140357200	Enhancers	Fetal Heart	heart
18	chr7:140356000-140357200	Enhancers	Fetal Intestine Small	intestine
19	chr7:140356000-140357200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr7:140356000-140357200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr7:140356000-140357400	Enhancers	Fetal Thymus	thymus
22	chr7:140356000-140357400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr7:140356200-140357200	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr7:140356400-140357400	Flanking Bivalent TSS/Enh	HepG2	liver
25	chr7:140356600-140357200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:140356600-140357200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:140356600-140357200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:140356600-140357200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr7:140356600-140357200	Enhancers	Psoas Muscle	Psoas
30	chr7:140356600-140357400	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:140356600-140357400	Enhancers	Lung	lung
32	chr7:140356800-140357200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:140356800-140357200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr7:140356800-140357200	Enhancers	Primary B cells from cord blood	blood
35	chr7:140356800-140357200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr7:140356800-140357200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr7:140356800-140357200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr7:140356800-140357200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr7:140356800-140357200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr7:140356800-140357200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:140356800-140357200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr7:140356800-140357200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:140356800-140357200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr7:140356800-140357200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:140356800-140357200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:140356800-140357200	Enhancers	Colonic Mucosa	Colon
47	chr7:140356800-140357200	Enhancers	Fetal Lung	lung
48	chr7:140356800-140357200	Enhancers	Pancreas	Pancrea
49	chr7:140356800-140357200	Enhancers	Dnd41	blood
50	chr7:140356800-140357200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links