Variant report

Variant	rs2968560
Chromosome Location	chr7:140357961-140357962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction
ENSG00000090266	Chromatin interaction
ENSG00000240889	Chromatin interaction
ENSG00000146966	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1106846	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28828674	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28896544	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908235	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930326	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930328	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930329	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930330	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2930332	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969644	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6977496	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7785630	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2968560	ADCK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140351800-140358000	Weak transcription	Gastric	stomach
2	chr7:140355400-140358400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:140357000-140358200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:140357000-140358400	Weak transcription	Osteobl	bone
5	chr7:140357000-140361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:140357200-140358000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:140357200-140358200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:140357200-140360200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:140357400-140358200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:140357400-140358800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:140357400-140358800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:140357400-140359200	Weak transcription	GM12878-XiMat	blood
13	chr7:140357400-140361200	Weak transcription	Placenta	Placenta
14	chr7:140357400-140361200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:140357600-140359600	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:140357800-140358200	Enhancers	Lung	lung
17	chr7:140357800-140358200	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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