Variant report

Variant	rs28925883
Chromosome Location	chr4:144323979-144323980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144323082..144326109-chr4:144328111..144333169,4	K562	blood:
2	chr4:144261573..144263488-chr4:144322361..144324414,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10519681	1.00[AMR][1000 genomes]
rs1866757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28989205	1.00[AMR][1000 genomes]
rs28989218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28989233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55789823	1.00[AMR][1000 genomes]
rs55872942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56372904	1.00[AMR][1000 genomes]
rs57024421	1.00[AMR][1000 genomes]
rs57336725	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57368559	1.00[AMR][1000 genomes]
rs57674712	1.00[AMR][1000 genomes]
rs57743690	1.00[AMR][1000 genomes]
rs60891033	1.00[AMR][1000 genomes]
rs61193096	1.00[AMR][1000 genomes]
rs61288732	1.00[AMR][1000 genomes]
rs61681472	1.00[AMR][1000 genomes]
rs73850695	1.00[AMR][1000 genomes]
rs73850696	1.00[AMR][1000 genomes]
rs73850702	1.00[AMR][1000 genomes]
rs73853806	1.00[AMR][1000 genomes]
rs73853807	1.00[AMR][1000 genomes]
rs73853808	1.00[AMR][1000 genomes]
rs73853810	1.00[AMR][1000 genomes]
rs73853811	1.00[AMR][1000 genomes]
rs73853812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853816	1.00[AMR][1000 genomes]
rs73853818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853824	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853832	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7696614	1.00[AMR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
2	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
3	chr4:144310200-144325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:144312600-144326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:144312600-144328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:144312800-144324000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:144312800-144331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:144313400-144324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:144313800-144332000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:144316800-144324400	Enhancers	Brain Substantia Nigra	brain
12	chr4:144317400-144327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:144317800-144325800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:144318200-144325600	Weak transcription	Lung	lung
15	chr4:144318200-144327600	Weak transcription	K562	blood
16	chr4:144318200-144337000	Weak transcription	Fetal Intestine Large	intestine
17	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:144319200-144324800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:144319200-144336600	Weak transcription	Fetal Kidney	kidney
20	chr4:144319400-144324000	Weak transcription	HSMM	muscle
21	chr4:144320000-144325600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:144320200-144324400	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:144320200-144325600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:144320400-144324400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:144320600-144328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr4:144320800-144324400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:144320800-144326600	Weak transcription	Stomach Mucosa	stomach
28	chr4:144321000-144327600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:144321200-144324400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:144321400-144324200	Weak transcription	Aorta	Aorta
31	chr4:144321600-144324400	Weak transcription	Right Atrium	heart
32	chr4:144321600-144325600	Weak transcription	Pancreas	Pancrea
33	chr4:144321800-144330200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:144322200-144334000	Enhancers	Fetal Heart	heart
35	chr4:144323000-144326400	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr4:144323200-144335800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:144323400-144324000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:144323400-144324000	Enhancers	Adipose Nuclei	Adipose
39	chr4:144323400-144324000	Enhancers	HSMMtube	muscle
40	chr4:144323400-144324200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:144323400-144324200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr4:144323400-144324400	Enhancers	Brain Anterior Caudate	brain
43	chr4:144323400-144324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:144323400-144324800	Enhancers	Fetal Brain Female	brain
45	chr4:144323400-144325000	Enhancers	Fetal Brain Male	brain
46	chr4:144323400-144327600	Enhancers	Colon Smooth Muscle	Colon
47	chr4:144323400-144328400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr4:144323400-144330400	Enhancers	HUVEC	blood vessel
49	chr4:144323600-144324000	Enhancers	Primary B cells from cord blood	blood
50	chr4:144323600-144324000	Flanking Active TSS	Brain Hippocampus Middle	brain

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