Variant report

Variant	rs61193096
Chromosome Location	chr4:144192871-144192872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144191423..144193797-chr4:144202159..144203758,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10519681	1.00[AMR][1000 genomes]
rs1866757	1.00[AMR][1000 genomes]
rs28925883	1.00[AMR][1000 genomes]
rs28989205	1.00[AMR][1000 genomes]
rs28989218	1.00[AMR][1000 genomes]
rs28989233	1.00[AMR][1000 genomes]
rs300944	0.81[AFR][1000 genomes]
rs300945	0.81[AFR][1000 genomes]
rs300950	0.81[AFR][1000 genomes]
rs55683567	1.00[AMR][1000 genomes]
rs55725000	0.81[AFR][1000 genomes]
rs55747899	0.86[AFR][1000 genomes]
rs55789823	1.00[AMR][1000 genomes]
rs55872942	1.00[AMR][1000 genomes]
rs56372904	1.00[AMR][1000 genomes]
rs57024421	1.00[AMR][1000 genomes]
rs57336725	1.00[AMR][1000 genomes]
rs57368559	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57674712	1.00[AMR][1000 genomes]
rs57743690	1.00[AMR][1000 genomes]
rs59311168	0.89[AFR][1000 genomes]
rs59434608	0.81[AFR][1000 genomes]
rs60891033	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61242181	0.86[AFR][1000 genomes]
rs61288732	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61681472	1.00[AMR][1000 genomes]
rs73850694	0.89[AFR][1000 genomes]
rs73850695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850696	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853806	1.00[AMR][1000 genomes]
rs73853807	1.00[AMR][1000 genomes]
rs73853808	1.00[AMR][1000 genomes]
rs73853810	1.00[AMR][1000 genomes]
rs73853811	1.00[AMR][1000 genomes]
rs73853812	1.00[AMR][1000 genomes]
rs73853814	1.00[AMR][1000 genomes]
rs73853816	1.00[AMR][1000 genomes]
rs73853818	1.00[AMR][1000 genomes]
rs73853824	1.00[AMR][1000 genomes]
rs73853832	1.00[AMR][1000 genomes]
rs73853834	1.00[AMR][1000 genomes]
rs7696614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv4531	chr4:144174573-144192930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144189800-144194400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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