Variant report
| Variant | rs56372904 |
|---|---|
| Chromosome Location | chr4:144226474-144226475 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000200049 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10519681 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1866757 | 1.00[AMR][1000 genomes] |
| rs28925883 | 1.00[AMR][1000 genomes] |
| rs28989205 | 1.00[AMR][1000 genomes] |
| rs28989218 | 1.00[AMR][1000 genomes] |
| rs28989233 | 1.00[AMR][1000 genomes] |
| rs55683567 | 1.00[AMR][1000 genomes] |
| rs55789823 | 1.00[AMR][1000 genomes] |
| rs55872942 | 1.00[AMR][1000 genomes] |
| rs57024421 | 1.00[AMR][1000 genomes] |
| rs57336725 | 1.00[AMR][1000 genomes] |
| rs57368559 | 1.00[AMR][1000 genomes] |
| rs57674712 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57743690 | 1.00[AMR][1000 genomes] |
| rs60891033 | 1.00[AMR][1000 genomes] |
| rs61193096 | 1.00[AMR][1000 genomes] |
| rs61288732 | 1.00[AMR][1000 genomes] |
| rs61681472 | 1.00[AMR][1000 genomes] |
| rs73850695 | 1.00[AMR][1000 genomes] |
| rs73850696 | 1.00[AMR][1000 genomes] |
| rs73850702 | 1.00[AMR][1000 genomes] |
| rs73853806 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853807 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853808 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853810 | 1.00[AMR][1000 genomes] |
| rs73853811 | 1.00[AMR][1000 genomes] |
| rs73853812 | 1.00[AMR][1000 genomes] |
| rs73853814 | 1.00[AMR][1000 genomes] |
| rs73853816 | 1.00[AMR][1000 genomes] |
| rs73853818 | 1.00[AMR][1000 genomes] |
| rs73853824 | 1.00[AMR][1000 genomes] |
| rs73853832 | 1.00[AMR][1000 genomes] |
| rs73853834 | 1.00[AMR][1000 genomes] |
| rs7696614 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033902 | chr4:144114413-144285772 | Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:144222600-144227000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 2 | chr4:144222600-144228600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr4:144224200-144228400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
