Variant report

Variant	rs28989233
Chromosome Location	chr4:144317662-144317663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:144315927..144318308-chr4:144352192..144353716,2	K562	blood:
2	chr4:144279896..144282516-chr4:144316177..144318703,2	K562	blood:
3	chr4:144316831..144319200-chr4:144321002..144323147,2	K562	blood:
4	chr4:144270926..144272635-chr4:144316602..144319536,2	K562	blood:
5	chr4:144316084..144318311-chr4:144327317..144330224,3	K562	blood:
6	chr4:144308580..144312274-chr4:144317112..144320354,4	K562	blood:
7	chr4:144105239..144107122-chr4:144315713..144318669,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction
ENSG00000228981	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10519681	1.00[AMR][1000 genomes]
rs1866757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28925883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28989205	1.00[AMR][1000 genomes]
rs28989218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55789823	1.00[AMR][1000 genomes]
rs55872942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56372904	1.00[AMR][1000 genomes]
rs57024421	1.00[AMR][1000 genomes]
rs57336725	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57368559	1.00[AMR][1000 genomes]
rs57674712	1.00[AMR][1000 genomes]
rs57743690	1.00[AMR][1000 genomes]
rs60891033	1.00[AMR][1000 genomes]
rs61193096	1.00[AMR][1000 genomes]
rs61288732	1.00[AMR][1000 genomes]
rs61681472	1.00[AMR][1000 genomes]
rs73850695	1.00[AMR][1000 genomes]
rs73850696	1.00[AMR][1000 genomes]
rs73850702	1.00[AMR][1000 genomes]
rs73853806	1.00[AMR][1000 genomes]
rs73853807	1.00[AMR][1000 genomes]
rs73853808	1.00[AMR][1000 genomes]
rs73853810	1.00[AMR][1000 genomes]
rs73853811	1.00[AMR][1000 genomes]
rs73853812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853816	1.00[AMR][1000 genomes]
rs73853818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853824	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853832	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7696614	1.00[AMR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303000-144318000	Weak transcription	HSMM	muscle
2	chr4:144303200-144317800	Weak transcription	Gastric	stomach
3	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
4	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
6	chr4:144307400-144323600	Enhancers	Brain Hippocampus Middle	brain
7	chr4:144308800-144319400	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
9	chr4:144310200-144325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:144311200-144320400	Weak transcription	Stomach Mucosa	stomach
11	chr4:144311400-144320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:144311600-144321600	Enhancers	Brain Angular Gyrus	brain
13	chr4:144312200-144321000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:144312400-144319000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:144312400-144323600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:144312600-144323800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:144312600-144326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:144312600-144328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:144312800-144324000	Weak transcription	Fetal Intestine Small	intestine
20	chr4:144312800-144331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:144313000-144319200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:144313000-144320200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:144313000-144323800	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:144313200-144318000	Weak transcription	NH-A	brain
26	chr4:144313200-144319000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:144313200-144319200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:144313200-144320400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:144313400-144320400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:144313400-144323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:144313400-144323400	Weak transcription	Fetal Brain Female	brain
32	chr4:144313400-144323600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:144313400-144324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:144313600-144319600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr4:144313800-144318400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:144313800-144320400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:144313800-144323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:144313800-144323600	Weak transcription	Liver	Liver
39	chr4:144313800-144332000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:144314400-144318800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:144314400-144321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:144314600-144321800	Enhancers	Fetal Heart	heart
43	chr4:144314600-144323400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:144314800-144318200	Weak transcription	HSMMtube	muscle
45	chr4:144315200-144318000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:144315400-144318000	Weak transcription	Fetal Lung	lung
47	chr4:144315600-144318000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:144315600-144318000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:144315600-144323600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:144316200-144318200	Weak transcription	Brain Anterior Caudate	brain

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