Variant report

Variant	rs2898029
Chromosome Location	chr5:57100088-57100089
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57086939..57088538-chr5:57099928..57101474,2	MCF-7	breast:
2	chr5:57098434..57101230-chr5:57136169..57138546,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58133420	0.95[EUR][1000 genomes]
rs58174590	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58436811	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59596075	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60783862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61514760	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62358429	0.82[ASN][1000 genomes]
rs62358435	0.82[ASN][1000 genomes]
rs62360074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360104	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360105	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360109	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360110	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360133	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62360137	0.95[EUR][1000 genomes]
rs6865443	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723284	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs960880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57088800-57102600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:57098200-57101600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:57099200-57101200	Enhancers	Aorta	Aorta
4	chr5:57099200-57101200	Enhancers	Fetal Heart	heart
5	chr5:57099200-57101200	Enhancers	Fetal Muscle Leg	muscle
6	chr5:57099200-57101800	Enhancers	HSMMtube	muscle
7	chr5:57099200-57102200	Enhancers	NH-A	brain
8	chr5:57099200-57102400	Enhancers	NHDF-Ad	bronchial
9	chr5:57099400-57101400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:57099400-57101400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr5:57099400-57102000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:57099400-57102400	Enhancers	Osteobl	bone
13	chr5:57099600-57100600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:57099600-57100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:57099600-57100600	Enhancers	HSMM	muscle
16	chr5:57099600-57100800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:57099600-57101400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:57099600-57101400	Enhancers	Colon Smooth Muscle	Colon
19	chr5:57099600-57101600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:57099800-57100600	Enhancers	Fetal Stomach	stomach
21	chr5:57099800-57100600	Enhancers	Psoas Muscle	Psoas
22	chr5:57099800-57101800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:57100000-57101200	Enhancers	NHLF	lung

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