Variant report

Variant	rs62360104
Chromosome Location	chr5:57113356-57113357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57105712..57108165-chr5:57110321..57113589,3	MCF-7	breast:
2	chr5:57108993..57111011-chr5:57112837..57114990,3	MCF-7	breast:
3	chr5:57112852..57115326-chr5:57117330..57119876,4	MCF-7	breast:
4	chr5:57112937..57114753-chr5:57754481..57756269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2898029	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58133420	0.95[EUR][1000 genomes]
rs58174590	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58436811	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59596075	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60783862	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61514760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62358427	1.00[AMR][1000 genomes]
rs62358429	1.00[AMR][1000 genomes]
rs62358439	1.00[AMR][1000 genomes]
rs62360074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360075	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360076	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360101	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360106	1.00[AMR][1000 genomes]
rs62360109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360133	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62360137	0.95[EUR][1000 genomes]
rs6865443	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866728	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57111600-57113400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:57111600-57113600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:57111600-57113600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:57111600-57113600	Enhancers	NHDF-Ad	bronchial
5	chr5:57111600-57113800	Enhancers	NHEK	skin
6	chr5:57111600-57114000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:57111600-57114000	Enhancers	HMEC	breast
8	chr5:57111600-57114200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:57111600-57114200	Enhancers	NH-A	brain
12	chr5:57111600-57114200	Enhancers	Osteobl	bone
13	chr5:57111600-57114400	Enhancers	HSMM	muscle
14	chr5:57111600-57114600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:57111800-57113800	Enhancers	A549	lung
16	chr5:57112000-57113400	Enhancers	Fetal Brain Female	brain
17	chr5:57112000-57113400	Enhancers	Fetal Lung	lung
18	chr5:57112000-57114800	Enhancers	HUVEC	blood vessel
19	chr5:57112200-57113400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:57112200-57113600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:57112200-57114000	Enhancers	NHLF	lung
22	chr5:57112400-57114200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:57112800-57113600	Enhancers	Right Atrium	heart
24	chr5:57113200-57119600	Weak transcription	Placenta Amnion	Placenta Amnion

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