Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2898029	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58133420	0.95[EUR][1000 genomes]
rs58174590	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59596075	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60783862	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61514760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360074	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360101	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360133	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62360137	0.95[EUR][1000 genomes]
rs6865443	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866728	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960880	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57121400-57132800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:57121600-57128800	Weak transcription	NHLF	lung
3	chr5:57121800-57129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:57122000-57128000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57122600-57125800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57122600-57127400	Weak transcription	HMEC	breast
7	chr5:57123600-57127400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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