Variant report

Variant	rs61514760
Chromosome Location	chr5:57113057-57113058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57105712..57108165-chr5:57110321..57113589,3	MCF-7	breast:
2	chr5:57108993..57111011-chr5:57112837..57114990,3	MCF-7	breast:
3	chr5:57112852..57115326-chr5:57117330..57119876,4	MCF-7	breast:
4	chr5:57112937..57114753-chr5:57754481..57756269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2898029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58133420	0.95[EUR][1000 genomes]
rs58174590	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58436811	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59596075	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60783862	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360074	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360075	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360076	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360101	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360103	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360133	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62360137	0.95[EUR][1000 genomes]
rs6865443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866728	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57110800-57113200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:57111600-57113400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:57111600-57113600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:57111600-57113600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:57111600-57113600	Enhancers	NHDF-Ad	bronchial
6	chr5:57111600-57113800	Enhancers	NHEK	skin
7	chr5:57111600-57114000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:57111600-57114000	Enhancers	HMEC	breast
9	chr5:57111600-57114200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:57111600-57114200	Enhancers	NH-A	brain
13	chr5:57111600-57114200	Enhancers	Osteobl	bone
14	chr5:57111600-57114400	Enhancers	HSMM	muscle
15	chr5:57111600-57114600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:57111800-57113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:57111800-57113800	Enhancers	A549	lung
18	chr5:57112000-57113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:57112000-57113200	Enhancers	Hela-S3	cervix
20	chr5:57112000-57113400	Enhancers	Fetal Brain Female	brain
21	chr5:57112000-57113400	Enhancers	Fetal Lung	lung
22	chr5:57112000-57114800	Enhancers	HUVEC	blood vessel
23	chr5:57112200-57113200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:57112200-57113200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr5:57112200-57113200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr5:57112200-57113400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr5:57112200-57113600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:57112200-57114000	Enhancers	NHLF	lung
29	chr5:57112400-57113200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr5:57112400-57114200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:57112800-57113600	Enhancers	Right Atrium	heart

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