Variant report

Variant	rs2899448
Chromosome Location	chr15:49978375-49978376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49977822..49979343-chr15:50042316..50044829,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10152754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10152787	0.82[EUR][1000 genomes]
rs10162802	0.81[EUR][1000 genomes]
rs10467920	0.81[EUR][1000 genomes]
rs1048348	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070708	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11070713	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11631904	0.81[EUR][1000 genomes]
rs11632201	0.81[ASN][1000 genomes]
rs11632674	0.81[EUR][1000 genomes]
rs11634751	0.81[EUR][1000 genomes]
rs11636378	0.81[EUR][1000 genomes]
rs11857320	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12185128	0.81[EUR][1000 genomes]
rs12437899	0.81[EUR][1000 genomes]
rs12440099	0.81[EUR][1000 genomes]
rs12441304	0.81[EUR][1000 genomes]
rs12905627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395902	0.81[EUR][1000 genomes]
rs1507618	0.84[AFR][1000 genomes]
rs1588131	0.81[EUR][1000 genomes]
rs1588132	0.81[EUR][1000 genomes]
rs1605477	0.81[EUR][1000 genomes]
rs1605478	0.81[EUR][1000 genomes]
rs1605479	0.81[EUR][1000 genomes]
rs1605484	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17482113	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1848289	0.81[EUR][1000 genomes]
rs1857992	0.83[EUR][1000 genomes]
rs1874612	0.81[EUR][1000 genomes]
rs1911614	0.81[EUR][1000 genomes]
rs2413953	0.81[EUR][1000 genomes]
rs2601020	0.88[EUR][1000 genomes]
rs28562087	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28788326	0.81[EUR][1000 genomes]
rs28822970	0.81[EUR][1000 genomes]
rs28842346	0.81[EUR][1000 genomes]
rs28871940	0.81[EUR][1000 genomes]
rs4303431	0.81[EUR][1000 genomes]
rs4775817	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55993510	0.83[EUR][1000 genomes]
rs56094557	0.81[EUR][1000 genomes]
rs56335122	0.81[EUR][1000 genomes]
rs56692783	0.81[EUR][1000 genomes]
rs57421305	0.83[EUR][1000 genomes]
rs57980364	0.81[EUR][1000 genomes]
rs57997677	0.81[EUR][1000 genomes]
rs60728602	0.81[EUR][1000 genomes]
rs62009983	0.81[EUR][1000 genomes]
rs62021583	0.81[EUR][1000 genomes]
rs62021584	0.81[EUR][1000 genomes]
rs62021585	0.81[EUR][1000 genomes]
rs62021586	0.81[EUR][1000 genomes]
rs62021587	0.81[EUR][1000 genomes]
rs6493376	0.81[EUR][1000 genomes]
rs67428220	0.81[EUR][1000 genomes]
rs67916122	0.81[EUR][1000 genomes]
rs68095295	0.82[EUR][1000 genomes]
rs692008	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7162351	0.81[EUR][1000 genomes]
rs7162792	0.81[EUR][1000 genomes]
rs7163740	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7164283	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7166202	0.81[EUR][1000 genomes]
rs7167429	0.81[EUR][1000 genomes]
rs7168031	0.81[EUR][1000 genomes]
rs7176306	0.81[AFR][1000 genomes]
rs7176350	0.81[EUR][1000 genomes]
rs7177247	0.82[EUR][1000 genomes]
rs7178194	0.81[EUR][1000 genomes]
rs7181916	0.81[EUR][1000 genomes]
rs7182072	0.81[EUR][1000 genomes]
rs7183313	0.81[EUR][1000 genomes]
rs731051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs733097	0.81[EUR][1000 genomes]
rs8029561	0.81[EUR][1000 genomes]
rs8030761	0.81[EUR][1000 genomes]
rs8033476	0.94[AFR][1000 genomes]
rs8034202	0.81[EUR][1000 genomes]
rs8035468	0.83[EUR][1000 genomes]
rs8036139	0.81[EUR][1000 genomes]
rs8041493	0.81[EUR][1000 genomes]
rs925103	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs962710	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49966800-49987400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links