Variant report

Variant	rs9635335
Chromosome Location	chr15:49965558-49965559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49958418..49961661-chr15:49962347..49965829,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10152754	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1048348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070696	0.81[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs11070697	0.82[ASN][1000 genomes]
rs11070708	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11630629	0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs11632201	0.87[ASN][1000 genomes]
rs11632674	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs11634751	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs11636378	0.82[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs11857320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12440323	0.86[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12441304	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs12594670	0.83[ASN][1000 genomes]
rs12899680	0.83[ASN][1000 genomes]
rs12905627	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1395902	0.81[EUR][1000 genomes]
rs1507618	0.82[AFR][1000 genomes]
rs1532955	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1588130	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1605481	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1605484	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17482113	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1874615	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1911614	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs2413953	0.86[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2413954	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2601020	0.84[EUR][1000 genomes]
rs28562087	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28788326	0.81[EUR][1000 genomes]
rs28842346	0.81[EUR][1000 genomes]
rs28871940	0.81[EUR][1000 genomes]
rs2899448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4303431	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4350524	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4775814	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4775815	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4775817	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56692783	0.81[EUR][1000 genomes]
rs62021586	0.81[EUR][1000 genomes]
rs62021587	0.81[EUR][1000 genomes]
rs6493376	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs692008	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7161744	0.83[ASN][1000 genomes]
rs7162800	0.86[CHB][hapmap]
rs7163740	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7164283	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7166202	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs7167429	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs7169799	0.82[ASN][1000 genomes]
rs7176306	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs7178143	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs7178468	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs7181916	0.81[EUR][1000 genomes]
rs7182072	0.81[EUR][1000 genomes]
rs731051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs733097	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs8027730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[ASN][1000 genomes]
rs8033476	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8035468	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs8041493	0.81[EUR][1000 genomes]
rs925103	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs962710	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs965134	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9635335	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49957200-49965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:49961800-49966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:49962000-49966600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:49962200-49965800	Weak transcription	Osteobl	bone
5	chr15:49962400-49966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:49962400-49966800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:49962800-49966800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:49963200-49967000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:49965400-49968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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