Variant report

Variant	rs925103
Chromosome Location	chr15:49919840-49919841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:49919444-49920185	MCF10A-Er-Src	breast:	n/a	chr15:49919995-49920006
2	JUND	chr15:49919320-49920343	SK-N-SH	brain:	n/a	chr15:49919376-49919384 chr15:49919376-49919383
3	JUND	chr15:49919447-49920202	Hela-S3	cervix:	n/a	n/a
4	MEF2A	chr15:49919486-49920334	SK-N-SH	brain:	n/a	chr15:49919535-49919556
5	MAX	chr15:49919532-49920224	HCT-116	colon:	n/a	n/a
6	FOS	chr15:49919549-49920142	Hela-S3	cervix:	n/a	chr15:49919995-49920006
7	JUN	chr15:49919600-49920113	HUVEC	blood vessel:	n/a	n/a
8	STAT3	chr15:49919629-49920032	MCF10A-Er-Src	breast:	n/a	n/a
9	TEAD4	chr15:49919483-49920332	SK-N-SH	brain:	n/a	n/a
10	RFX5	chr15:49919508-49920129	Hela-S3	cervix:	n/a	n/a
11	FOSL1	chr15:49919433-49920123	HCT-116	colon:	n/a	n/a
12	NR3C1	chr15:49919746-49919903	A549	lung:	n/a	n/a
13	MAFK	chr15:49919669-49920248	IMR90	lung:	n/a	n/a
14	EP300	chr15:49919485-49920188	Hela-S3	cervix:	n/a	n/a
15	TEAD4	chr15:49919796-49920120	A549	lung:	n/a	n/a
16	TEAD4	chr15:49919724-49920136	ECC-1	luminal epithelium:	n/a	n/a
17	PBX3	chr15:49919470-49920154	SK-N-SH	brain:	n/a	n/a
18	EP300	chr15:49919404-49920250	SK-N-SH	brain:	n/a	n/a
19	CEBPB	chr15:49919360-49920159	HCT-116	colon:	n/a	n/a
20	GATA3	chr15:49919332-49920286	SK-N-SH	brain:	n/a	n/a
21	NR3C1	chr15:49919618-49920067	A549	lung:	n/a	n/a
22	POLR2A	chr15:49919450-49920114	SK-N-SH	brain:	n/a	n/a
23	FOSL2	chr15:49919314-49920167	SK-N-SH	brain:	n/a	chr15:49919376-49919384 chr15:49919376-49919383
24	RAD21	chr15:49919557-49920116	Hela-S3	cervix:	n/a	n/a
25	STAT3	chr15:49919529-49920089	MCF10A-Er-Src	breast:	n/a	n/a
26	FOSL1	chr15:49919314-49920284	HCT-116	colon:	n/a	chr15:49919376-49919384 chr15:49919376-49919383
27	TCF12	chr15:49919294-49920270	SK-N-SH	brain:	n/a	n/a
28	SP1	chr15:49919309-49920130	HCT-116	colon:	n/a	n/a
29	GATA3	chr15:49919538-49920244	A549	lung:	n/a	n/a
30	MYC	chr15:49919517-49920140	MCF10A-Er-Src	breast:	n/a	n/a
31	CBX3	chr15:49919570-49920099	HCT-116	colon:	n/a	n/a
32	POLR2A	chr15:49919582-49920072	MCF10A-Er-Src	breast:	n/a	n/a
33	CEBPB	chr15:49919513-49920133	Hela-S3	cervix:	n/a	n/a
34	JUND	chr15:49919378-49920312	SK-N-SH	brain:	n/a	n/a
35	GATA3	chr15:49919315-49920255	SK-N-SH	brain:	n/a	n/a
36	FOSL2	chr15:49919476-49920145	MCF-7	breast:	n/a	n/a
37	FOXA1	chr15:49919578-49920077	A549	lung:	n/a	n/a
38	FOSL2	chr15:49919413-49920241	A549	lung:	n/a	n/a
39	JUND	chr15:49919442-49920178	HCT-116	colon:	n/a	n/a
40	TEAD4	chr15:49919542-49920157	HCT-116	colon:	n/a	n/a
41	FOS	chr15:49919474-49920165	MCF10A-Er-Src	breast:	n/a	chr15:49919995-49920006
42	STAT3	chr15:49919510-49920369	MCF10A-Er-Src	breast:	n/a	n/a
43	MAFK	chr15:49919423-49920232	Hela-S3	cervix:	n/a	chr15:49919555-49919566
44	CEBPB	chr15:49919474-49920008	A549	lung:	n/a	n/a
45	NR3C1	chr15:49919613-49920047	A549	lung:	n/a	n/a
46	CEBPB	chr15:49919599-49919906	A549	lung:	n/a	n/a
47	NR3C1	chr15:49919588-49920057	A549	lung:	n/a	n/a
48	CEBPB	chr15:49919544-49919933	MCF-7	breast:	n/a	n/a
49	CEBPB	chr15:49919545-49919949	IMR90	lung:	n/a	n/a
50	TEAD4	chr15:49919505-49920281	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:49918504..49920160-chr15:50344164..50346378,2	MCF-7	breast:
2	chr15:49918122..49920782-chr15:49929071..49931925,2	MCF-7	breast:
3	chr15:49849928..49852326-chr15:49917906..49919869,2	MCF-7	breast:

Variant related genes	Relation type
DTWD1	TF binding region

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10083602	0.81[EUR][1000 genomes]
rs10152754	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10152787	0.86[EUR][1000 genomes]
rs10162802	0.85[EUR][1000 genomes]
rs10467920	0.85[EUR][1000 genomes]
rs1048348	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1057638	0.82[EUR][1000 genomes]
rs11070694	0.81[EUR][1000 genomes]
rs11070696	0.83[EUR][1000 genomes]
rs11070697	0.91[ASN][1000 genomes]
rs11070708	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070713	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11630629	0.81[EUR][1000 genomes]
rs11631904	0.85[EUR][1000 genomes]
rs11632003	0.83[EUR][1000 genomes]
rs11632201	0.97[ASN][1000 genomes]
rs11632674	0.87[EUR][1000 genomes]
rs11634751	0.85[EUR][1000 genomes]
rs11636378	0.85[EUR][1000 genomes]
rs11857320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185128	0.85[EUR][1000 genomes]
rs12437460	0.82[EUR][1000 genomes]
rs12437899	0.85[EUR][1000 genomes]
rs12438444	0.82[EUR][1000 genomes]
rs12438856	0.81[EUR][1000 genomes]
rs12440099	0.85[EUR][1000 genomes]
rs12440323	0.81[EUR][1000 genomes]
rs12441304	0.85[EUR][1000 genomes]
rs12442143	0.81[EUR][1000 genomes]
rs12443123	0.83[EUR][1000 genomes]
rs12594670	0.92[ASN][1000 genomes]
rs12899680	0.92[ASN][1000 genomes]
rs12905627	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1395902	0.87[EUR][1000 genomes]
rs1588131	0.85[EUR][1000 genomes]
rs1588132	0.85[EUR][1000 genomes]
rs1605477	0.88[EUR][1000 genomes]
rs1605478	0.88[EUR][1000 genomes]
rs1605479	0.88[EUR][1000 genomes]
rs1605484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962528	0.81[EUR][1000 genomes]
rs16973952	0.81[EUR][1000 genomes]
rs17401417	0.81[EUR][1000 genomes]
rs17482113	0.82[EUR][1000 genomes]
rs1848289	0.85[EUR][1000 genomes]
rs1857992	0.86[EUR][1000 genomes]
rs1874612	0.85[EUR][1000 genomes]
rs1911614	0.87[EUR][1000 genomes]
rs2007474	0.86[EUR][1000 genomes]
rs2413946	0.81[EUR][1000 genomes]
rs2413953	0.85[EUR][1000 genomes]
rs2601020	0.81[EUR][1000 genomes]
rs28460471	0.82[EUR][1000 genomes]
rs28562087	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28788326	0.87[EUR][1000 genomes]
rs28815194	0.86[EUR][1000 genomes]
rs28822970	0.88[EUR][1000 genomes]
rs28836194	0.86[EUR][1000 genomes]
rs28841970	0.83[EUR][1000 genomes]
rs28842346	0.87[EUR][1000 genomes]
rs28871940	0.87[EUR][1000 genomes]
rs2899433	0.81[EUR][1000 genomes]
rs2899448	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4303431	0.88[EUR][1000 genomes]
rs4614670	0.81[EUR][1000 genomes]
rs4775811	0.82[EUR][1000 genomes]
rs4775817	0.82[EUR][1000 genomes]
rs55993510	0.86[EUR][1000 genomes]
rs56094557	0.85[EUR][1000 genomes]
rs56335122	0.88[EUR][1000 genomes]
rs56692783	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57421305	0.86[EUR][1000 genomes]
rs57980364	0.85[EUR][1000 genomes]
rs57997677	0.85[EUR][1000 genomes]
rs58284238	0.82[EUR][1000 genomes]
rs58410445	0.81[EUR][1000 genomes]
rs60728602	0.85[EUR][1000 genomes]
rs62009983	0.85[EUR][1000 genomes]
rs62009985	0.83[EUR][1000 genomes]
rs62021583	0.88[EUR][1000 genomes]
rs62021584	0.88[EUR][1000 genomes]
rs62021585	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62021586	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62021587	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493371	0.81[EUR][1000 genomes]
rs6493373	0.81[EUR][1000 genomes]
rs6493376	0.88[EUR][1000 genomes]
rs67428220	0.85[EUR][1000 genomes]
rs67916122	0.85[EUR][1000 genomes]
rs68095295	0.86[EUR][1000 genomes]
rs692008	0.83[EUR][1000 genomes]
rs7161744	0.92[ASN][1000 genomes]
rs7162351	0.85[EUR][1000 genomes]
rs7162792	0.85[EUR][1000 genomes]
rs7162800	0.83[EUR][1000 genomes]
rs7163740	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7164283	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7166049	0.81[EUR][1000 genomes]
rs7166202	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7166498	0.81[EUR][1000 genomes]
rs7167041	0.81[EUR][1000 genomes]
rs7167429	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7168031	0.85[EUR][1000 genomes]
rs7169799	0.91[ASN][1000 genomes]
rs7170426	0.81[EUR][1000 genomes]
rs7176306	0.92[AFR][1000 genomes]
rs7176350	0.85[EUR][1000 genomes]
rs7177247	0.86[EUR][1000 genomes]
rs7178194	0.85[EUR][1000 genomes]
rs7181916	0.87[EUR][1000 genomes]
rs7182072	0.87[EUR][1000 genomes]
rs7183313	0.85[EUR][1000 genomes]
rs731051	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs733097	0.87[EUR][1000 genomes]
rs8026236	0.81[EUR][1000 genomes]
rs8027730	0.92[ASN][1000 genomes]
rs8029561	0.85[EUR][1000 genomes]
rs8029743	0.85[EUR][1000 genomes]
rs8030761	0.88[EUR][1000 genomes]
rs8033476	0.89[AFR][1000 genomes]
rs8034202	0.85[EUR][1000 genomes]
rs8035468	0.86[EUR][1000 genomes]
rs8036139	0.85[EUR][1000 genomes]
rs8039062	0.82[EUR][1000 genomes]
rs8041493	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs906419	0.86[EUR][1000 genomes]
rs9302148	0.81[EUR][1000 genomes]
rs962710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9635335	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9972329	0.81[EUR][1000 genomes]
rs9972429	0.81[EUR][1000 genomes]
rs9972565	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569392	chr15:49789413-49926300	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49913600-49937400	Weak transcription	Spleen	Spleen
2	chr15:49914000-49930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:49914400-49927200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49914400-49936400	Weak transcription	Small Intestine	intestine
5	chr15:49914400-49938000	Weak transcription	Brain Substantia Nigra	brain
6	chr15:49914600-49927200	Weak transcription	Fetal Brain Female	brain
7	chr15:49914600-49932600	Weak transcription	Fetal Brain Male	brain
8	chr15:49914600-49934400	Weak transcription	Stomach Mucosa	stomach
9	chr15:49914800-49937800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:49915000-49936600	Weak transcription	Pancreas	Pancrea
11	chr15:49915400-49937800	Weak transcription	Brain Anterior Caudate	brain
12	chr15:49916000-49936400	Weak transcription	Psoas Muscle	Psoas
13	chr15:49917200-49920200	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:49917200-49920800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:49917200-49921000	Strong transcription	Stomach Smooth Muscle	stomach
16	chr15:49917600-49920000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:49918000-49938600	Weak transcription	Right Ventricle	heart
18	chr15:49918000-49938800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:49918200-49920400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:49918200-49920800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:49918200-49921000	Weak transcription	Primary T cells from cord blood	blood
22	chr15:49918200-49921000	Enhancers	HMEC	breast
23	chr15:49918200-49921800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:49918200-49922000	Strong transcription	Liver	Liver
25	chr15:49918200-49922800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:49918200-49922800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:49918200-49922800	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:49918200-49922800	Weak transcription	Fetal Stomach	stomach
29	chr15:49918200-49923000	Weak transcription	Fetal Lung	lung
30	chr15:49918200-49923800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:49918200-49924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:49918200-49927200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:49918200-49927200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:49918200-49927200	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:49918200-49927200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:49918200-49927200	Weak transcription	Fetal Intestine Small	intestine
37	chr15:49918200-49927200	Weak transcription	Left Ventricle	heart
38	chr15:49918200-49927400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr15:49918200-49927400	Weak transcription	Fetal Thymus	thymus
40	chr15:49918200-49927600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:49918200-49927600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:49918200-49927600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:49918200-49927600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:49918200-49927600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:49918200-49927600	Weak transcription	Gastric	stomach
46	chr15:49918200-49927600	Weak transcription	Lung	lung
47	chr15:49918200-49929200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:49918200-49929400	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:49918200-49929400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:49918200-49929800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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