Variant report

Variant	rs11070713
Chromosome Location	chr15:49951971-49951972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62607720..62610476-chr15:49951161..49953011,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10152754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048348	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070697	0.85[ASN][1000 genomes]
rs11070708	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632201	0.90[ASN][1000 genomes]
rs11632674	0.81[EUR][1000 genomes]
rs11857320	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594670	0.86[ASN][1000 genomes]
rs12899680	0.86[ASN][1000 genomes]
rs12905627	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1395902	0.81[EUR][1000 genomes]
rs1605477	0.81[EUR][1000 genomes]
rs1605478	0.81[EUR][1000 genomes]
rs1605479	0.81[EUR][1000 genomes]
rs1605484	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17482113	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1911614	0.81[EUR][1000 genomes]
rs2601020	0.84[EUR][1000 genomes]
rs28562087	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28788326	0.81[EUR][1000 genomes]
rs28822970	0.81[EUR][1000 genomes]
rs28842346	0.81[EUR][1000 genomes]
rs28871940	0.81[EUR][1000 genomes]
rs2899448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4303431	0.81[EUR][1000 genomes]
rs4775817	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56335122	0.81[EUR][1000 genomes]
rs56692783	0.81[EUR][1000 genomes]
rs62021583	0.81[EUR][1000 genomes]
rs62021584	0.81[EUR][1000 genomes]
rs62021585	0.81[EUR][1000 genomes]
rs62021586	0.81[EUR][1000 genomes]
rs62021587	0.81[EUR][1000 genomes]
rs6493376	0.81[EUR][1000 genomes]
rs692008	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7161744	0.86[ASN][1000 genomes]
rs7163740	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7164283	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166202	0.81[EUR][1000 genomes]
rs7167429	0.81[EUR][1000 genomes]
rs7169799	0.85[ASN][1000 genomes]
rs7176306	0.81[AFR][1000 genomes]
rs7181916	0.81[EUR][1000 genomes]
rs7182072	0.81[EUR][1000 genomes]
rs731051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8027730	0.86[ASN][1000 genomes]
rs8030761	0.81[EUR][1000 genomes]
rs8033476	0.94[AFR][1000 genomes]
rs8041493	0.81[EUR][1000 genomes]
rs925103	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs962710	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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