Variant report
| Variant | rs7169799 |
|---|---|
| Chromosome Location | chr15:49794020-49794021 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10152754 | 0.85[ASN][1000 genomes] |
| rs1048348 | 0.85[ASN][1000 genomes] |
| rs11070697 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11070708 | 0.97[ASN][1000 genomes] |
| rs11070713 | 0.85[ASN][1000 genomes] |
| rs11632201 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11852293 | 0.84[GIH][hapmap] |
| rs11857320 | 0.91[ASN][1000 genomes] |
| rs12050614 | 1.00[LWK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs12594670 | 0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12899680 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1605484 | 0.92[ASN][1000 genomes] |
| rs28562087 | 0.85[ASN][1000 genomes] |
| rs62021589 | 0.84[AFR][1000 genomes] |
| rs7161744 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7163740 | 0.97[ASN][1000 genomes] |
| rs7164283 | 0.90[ASN][1000 genomes] |
| rs731051 | 0.85[ASN][1000 genomes] |
| rs8027730 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs925103 | 0.91[ASN][1000 genomes] |
| rs962710 | 0.92[ASN][1000 genomes] |
| rs9635335 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9263 | chr15:49734435-49809465 | Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043119 | chr15:49760222-49844366 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039185 | chr15:49786255-49844366 | Strong transcription Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv569392 | chr15:49789413-49926300 | ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:49787600-49794800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
