Variant report

Variant	rs2912318
Chromosome Location	chr18:28844359-28844360
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11081685	0.80[EUR][1000 genomes]
rs11081687	0.80[CEU][hapmap]
rs11660200	0.82[EUR][1000 genomes]
rs2217075	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2912316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2912320	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2912323	0.80[EUR][1000 genomes]
rs2912341	0.82[EUR][1000 genomes]
rs2919981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2919982	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60538176	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61691923	0.82[EUR][1000 genomes]
rs62088664	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28837200-28845400	Weak transcription	Liver	Liver
2	chr18:28841600-28844600	Enhancers	Fetal Intestine Large	intestine
3	chr18:28842200-28847400	Weak transcription	GM12878-XiMat	blood
4	chr18:28842400-28849000	Weak transcription	HepG2	liver
5	chr18:28842600-28849200	Weak transcription	Fetal Kidney	kidney
6	chr18:28843000-28847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:28844000-28847600	Weak transcription	Fetal Intestine Small	intestine
8	chr18:28844000-28847800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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