Variant report

Variant	rs60538176
Chromosome Location	chr18:28861631-28861632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11081685	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11660200	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2114270	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2217075	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2912316	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2912318	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2912320	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2912334	0.81[AMR][1000 genomes]
rs2912335	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2912341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2919981	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2919982	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61691923	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62088664	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8095423	0.85[AMR][1000 genomes]
rs9949912	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28858800-28862400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr18:28859000-28867600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:28860000-28862800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:28860200-28862600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:28860400-28862600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:28860600-28863200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:28860800-28862800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:28861200-28861800	Enhancers	HepG2	liver
9	chr18:28861200-28869400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:28861400-28861800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr18:28861600-28862000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr18:28861600-28862800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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