Variant report

Variant	rs2912335
Chromosome Location	chr18:28873910-28873911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10468901	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11081687	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2114270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2303465	0.85[CEU][hapmap]
rs2912316	0.81[CEU][hapmap]
rs2912334	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2919982	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4399610	0.85[CEU][hapmap]
rs60538176	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6506910	0.84[ASN][1000 genomes]
rs6506917	0.88[EUR][1000 genomes]
rs7229263	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7236327	0.85[CEU][hapmap]
rs8095423	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs930963	0.85[CEU][hapmap]
rs977434	0.86[CEU][hapmap]
rs9949912	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9965256	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3422577	chr18:28862003-28881811	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28873200-28874000	Enhancers	Liver	Liver
2	chr18:28873600-28874600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:28873600-28874600	Enhancers	Stomach Mucosa	stomach
4	chr18:28873600-28875200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr18:28873800-28874600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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