Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10438930	1.00[JPT][hapmap]
rs10468901	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11081687	0.92[CEU][hapmap]
rs11660608	0.81[CEU][hapmap]
rs11663622	1.00[JPT][hapmap]
rs11875560	1.00[JPT][hapmap]
rs2114270	0.89[EUR][1000 genomes]
rs2162272	0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs2303465	0.89[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2912334	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2912335	0.88[EUR][1000 genomes]
rs3810007	1.00[JPT][hapmap]
rs4399610	0.89[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62090172	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6506915	1.00[JPT][hapmap]
rs6506916	1.00[JPT][hapmap]
rs6506917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233743	1.00[JPT][hapmap]
rs7234662	1.00[JPT][hapmap]
rs7234854	1.00[JPT][hapmap]
rs7235951	0.81[CEU][hapmap]
rs7236327	0.89[CEU][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs8091151	1.00[JPT][hapmap]
rs8091847	1.00[JPT][hapmap]
rs8095423	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs930963	0.89[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs977434	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9947296	1.00[JPT][hapmap]
rs9947444	1.00[JPT][hapmap]
rs9949912	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9965256	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv909516	chr18:28910615-28946104	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28899600-28927200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28904800-28933800	Weak transcription	Esophagus	oesophagus
3	chr18:28910600-28913600	Strong transcription	Liver	Liver

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