Variant report

Variant	rs2919982
Chromosome Location	chr18:28854202-28854203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DSG1-7	chr18:28853309-28855721	NONHSAT058813

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10468901	0.82[CEU][hapmap]
rs11081685	0.81[EUR][1000 genomes]
rs11081687	0.86[CEU][hapmap]
rs11660200	0.83[EUR][1000 genomes]
rs2114270	0.85[AFR][1000 genomes]
rs2217075	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2912316	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2912318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2912320	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2912335	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2912341	0.83[EUR][1000 genomes]
rs2919981	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60538176	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61691923	0.83[EUR][1000 genomes]
rs62088664	0.83[EUR][1000 genomes]
rs7229263	0.87[CEU][hapmap]
rs8095423	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28848200-28854800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr18:28849400-28854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:28849400-28854800	Weak transcription	Hela-S3	cervix
4	chr18:28849400-28854800	Weak transcription	NH-A	brain
5	chr18:28849400-28855000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:28849800-28855000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr18:28850000-28855000	Weak transcription	Fetal Heart	heart
8	chr18:28850000-28855000	Weak transcription	Small Intestine	intestine
9	chr18:28850200-28854800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:28850200-28855000	Weak transcription	Stomach Mucosa	stomach
11	chr18:28853200-28855200	Enhancers	Fetal Intestine Large	intestine
12	chr18:28853800-28855200	Enhancers	A549	lung
13	chr18:28853800-28855400	Enhancers	Liver	Liver
14	chr18:28853800-28855800	Enhancers	Fetal Intestine Small	intestine
15	chr18:28853800-28859400	Enhancers	HepG2	liver
16	chr18:28854200-28854400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr18:28854200-28855000	Enhancers	NHEK	skin
18	chr18:28854200-28855400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr18:28854200-28855600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr18:28854200-28856000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr18:28854200-28856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr18:28854200-28856000	Enhancers	Psoas Muscle	Psoas
23	chr18:28854200-28856400	Enhancers	Adipose Nuclei	Adipose
24	chr18:28854200-28856400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr18:28854200-28856400	Enhancers	HMEC	breast
26	chr18:28854200-28856600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr18:28854200-28856600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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