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Variant report
Variant
rs2962008
Chromosome Location
chr5:57476695-57476696
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:57474524..57477052-chr5:57532644..57534284,2
MCF-7
breast:
2
chr5:57476351..57480907-chr5:57753998..57756749,5
MCF-7
breast:
3
chr5:57391599..57394381-chr5:57475722..57478619,2
MCF-7
breast:
4
chr5:57475683..57478861-chr5:57750004..57752974,3
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000145632
Chromatin interaction
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs2161512
1.00[ASN][1000 genomes]
rs2910607
0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910609
0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962013
0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874670
1.00[ASN][1000 genomes]
rs6882495
1.00[ASN][1000 genomes]
rs73087658
1.00[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links