Variant report

Variant	rs2161512
Chromosome Location	chr5:57480015-57480016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57479311..57481090-chr5:57734441..57736091,2	MCF-7	breast:
2	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
3	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
4	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
5	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
6	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
7	chr5:56730659..56732507-chr5:57478497..57480743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rs_ID	r²[population]
rs11742619	0.87[CEU][hapmap]
rs2910607	1.00[ASN][1000 genomes]
rs2910609	1.00[ASN][1000 genomes]
rs2962008	1.00[ASN][1000 genomes]
rs2962013	1.00[ASN][1000 genomes]
rs2962015	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2964185	1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6874670	1.00[ASN][1000 genomes]
rs6882495	1.00[ASN][1000 genomes]
rs73087658	1.00[ASN][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57486000	Enhancers	HSMM	muscle
2	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
3	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
4	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57478200-57480800	Enhancers	A549	lung
7	chr5:57478400-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:57478600-57482200	Enhancers	HMEC	breast
9	chr5:57478600-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:57478600-57482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:57478600-57483800	Enhancers	NHEK	skin
12	chr5:57478800-57480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:57478800-57481400	Weak transcription	Gastric	stomach
14	chr5:57478800-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:57478800-57483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
17	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:57479000-57483600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:57479000-57484000	Weak transcription	Fetal Kidney	kidney
20	chr5:57479200-57483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:57479400-57480600	Weak transcription	HUVEC	blood vessel
22	chr5:57479400-57485200	Weak transcription	Aorta	Aorta
23	chr5:57479600-57482200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:57479600-57483800	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:57480000-57482000	Enhancers	NHDF-Ad	bronchial
26	chr5:57480000-57483400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:57480000-57483600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:57480000-57483800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:57480000-57486000	Enhancers	Osteobl	bone

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