Variant report

Variant	rs2964185
Chromosome Location	chr5:57478318-57478319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
3	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
4	chr5:57391599..57394381-chr5:57475722..57478619,2	MCF-7	breast:
5	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
6	chr5:57475683..57478861-chr5:57750004..57752974,3	MCF-7	breast:
7	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:
8	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11739055	0.91[ASN][1000 genomes]
rs11741711	0.91[ASN][1000 genomes]
rs11742619	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2161512	1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2409014	0.91[ASN][1000 genomes]
rs2962010	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2962015	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964182	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2964183	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2964186	1.00[ASN][1000 genomes]
rs35359164	0.91[ASN][1000 genomes]
rs56160829	1.00[ASN][1000 genomes]
rs73757719	0.91[ASN][1000 genomes]
rs7713811	0.91[ASN][1000 genomes]
rs988696	0.91[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57479200	Enhancers	Stomach Mucosa	stomach
2	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57477200-57486000	Enhancers	HSMM	muscle
4	chr5:57477400-57478600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:57477400-57479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:57477400-57479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:57477400-57479200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
10	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
11	chr5:57477600-57478800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:57477600-57479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
15	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:57477800-57478600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:57477800-57478600	Enhancers	Fetal Lung	lung
18	chr5:57477800-57478800	Enhancers	Brain Hippocampus Middle	brain
19	chr5:57477800-57478800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr5:57478000-57478400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:57478000-57478800	Enhancers	Brain Angular Gyrus	brain
22	chr5:57478000-57479000	Enhancers	Fetal Kidney	kidney
23	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:57478200-57478400	Enhancers	Osteobl	bone
25	chr5:57478200-57478600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:57478200-57478800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:57478200-57478800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:57478200-57478800	Enhancers	Brain Anterior Caudate	brain
29	chr5:57478200-57478800	Enhancers	Brain Cingulate Gyrus	brain
30	chr5:57478200-57478800	Enhancers	Gastric	stomach
31	chr5:57478200-57478800	Enhancers	Ovary	ovary
32	chr5:57478200-57479000	Enhancers	Brain Germinal Matrix	brain
33	chr5:57478200-57480000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr5:57478200-57480800	Enhancers	A549	lung

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