Variant report

Variant	rs2964183
Chromosome Location	chr5:57477809-57477810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
3	chr5:57391599..57394381-chr5:57475722..57478619,2	MCF-7	breast:
4	chr5:57475683..57478861-chr5:57750004..57752974,3	MCF-7	breast:
5	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11739055	0.91[ASN][1000 genomes]
rs11741711	0.91[ASN][1000 genomes]
rs11742619	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2409014	0.91[ASN][1000 genomes]
rs2962010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962015	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2964182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964185	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2964186	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35359164	0.91[ASN][1000 genomes]
rs56160829	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73757719	0.91[ASN][1000 genomes]
rs7713811	0.91[ASN][1000 genomes]
rs988696	0.91[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57477200-57479200	Enhancers	Stomach Mucosa	stomach
3	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:57477200-57486000	Enhancers	HSMM	muscle
5	chr5:57477400-57478600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:57477400-57479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:57477400-57479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:57477400-57479200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
11	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
12	chr5:57477600-57478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:57477600-57478200	Weak transcription	Gastric	stomach
14	chr5:57477600-57478200	Flanking Active TSS	A549	lung
15	chr5:57477600-57478800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:57477600-57479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
19	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:57477800-57478200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:57477800-57478200	Weak transcription	Ovary	ovary
22	chr5:57477800-57478600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:57477800-57478600	Enhancers	Fetal Lung	lung
24	chr5:57477800-57478800	Enhancers	Brain Hippocampus Middle	brain
25	chr5:57477800-57478800	Enhancers	Pancreatic Islets	Pancreatic Islet

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