Variant report

Variant	rs2409014
Chromosome Location	chr5:57494453-57494454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11739055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2161512	0.87[CEU][hapmap]
rs2962010	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2962015	1.00[CHB][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs2964182	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2964183	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2964185	0.81[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.80[MEX][hapmap];0.92[YRI][hapmap];0.91[ASN][1000 genomes]
rs2964186	0.91[ASN][1000 genomes]
rs35359164	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56160829	0.91[ASN][1000 genomes]
rs73757719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713811	1.00[ASN][1000 genomes]
rs988696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969959	chr5:57486620-57495174	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57487800-57497600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57493800-57496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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