Variant report
| Variant | rs2964182 |
|---|---|
| Chromosome Location | chr5:57476508-57476509 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57474524..57477052-chr5:57532644..57534284,2 | MCF-7 | breast: | |
| 2 | chr5:57476351..57480907-chr5:57753998..57756749,5 | MCF-7 | breast: | |
| 3 | chr5:57391599..57394381-chr5:57475722..57478619,2 | MCF-7 | breast: | |
| 4 | chr5:57475683..57478861-chr5:57750004..57752974,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11739055 | 0.91[ASN][1000 genomes] |
| rs11741711 | 0.91[ASN][1000 genomes] |
| rs11742619 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs2409014 | 0.91[ASN][1000 genomes] |
| rs2962010 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2962015 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2964183 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2964185 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2964186 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35359164 | 0.91[ASN][1000 genomes] |
| rs56160829 | 0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73757719 | 0.91[ASN][1000 genomes] |
| rs7713811 | 0.91[ASN][1000 genomes] |
| rs988696 | 0.91[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
