Variant report
| Variant | rs2962013 |
|---|---|
| Chromosome Location | chr5:57470687-57470688 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57469177..57471209-chr5:57754452..57757223,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs2161512 | 1.00[ASN][1000 genomes] |
| rs2910607 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2910609 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2962008 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6874670 | 1.00[ASN][1000 genomes] |
| rs6882495 | 1.00[ASN][1000 genomes] |
| rs73087658 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033051 | chr5:57380218-57471801 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
