Variant report

Variant	rs73087658
Chromosome Location	chr5:57448380-57448381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2161512	1.00[ASN][1000 genomes]
rs2910607	1.00[ASN][1000 genomes]
rs2910609	1.00[ASN][1000 genomes]
rs2962008	1.00[ASN][1000 genomes]
rs2962013	1.00[ASN][1000 genomes]
rs6874670	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57445600-57448800	Weak transcription	A549	lung
3	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
4	chr5:57446000-57451400	Weak transcription	HSMM	muscle
5	chr5:57446600-57451800	Weak transcription	HSMMtube	muscle
6	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links