Variant report

Variant	rs2995539
Chromosome Location	chr10:28630869-28630870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:28630816-28630914	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ZNF101P1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11007032	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11007033	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1148177	0.82[ASN][1000 genomes]
rs1148178	0.82[ASN][1000 genomes]
rs1148179	0.82[ASN][1000 genomes]
rs1148180	0.82[ASN][1000 genomes]
rs1148181	0.82[ASN][1000 genomes]
rs1148185	0.82[ASN][1000 genomes]
rs1148186	0.82[ASN][1000 genomes]
rs12098315	0.82[ASN][1000 genomes]
rs12098807	0.82[ASN][1000 genomes]
rs1249340	0.93[ASN][1000 genomes]
rs1249347	0.82[ASN][1000 genomes]
rs1249348	0.82[ASN][1000 genomes]
rs1273097	0.82[ASN][1000 genomes]
rs1379320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1762188	0.86[ASN][1000 genomes]
rs2447629	0.82[ASN][1000 genomes]
rs2797595	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34827546	0.82[ASN][1000 genomes]
rs72805627	0.82[ASN][1000 genomes]
rs72805630	0.89[ASN][1000 genomes]
rs72805631	0.93[ASN][1000 genomes]
rs811496	0.86[ASN][1000 genomes]
rs813081	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28626400-28631600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:28626400-28631800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:28629000-28632800	Weak transcription	HepG2	liver

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