Variant report
Variant | rs1379320 |
---|---|
Chromosome Location | chr10:28629843-28629844 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11006935 | 0.82[CHB][hapmap] |
rs11006941 | 0.82[CHB][hapmap] |
rs11006942 | 0.82[CHB][hapmap] |
rs11007032 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11007033 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1148177 | 0.82[ASN][1000 genomes] |
rs1148178 | 0.82[ASN][1000 genomes] |
rs1148179 | 0.82[ASN][1000 genomes] |
rs1148180 | 0.82[ASN][1000 genomes] |
rs1148181 | 0.82[ASN][1000 genomes] |
rs1148182 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1148183 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1148185 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1148186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs12098315 | 0.82[ASN][1000 genomes] |
rs12098807 | 0.82[ASN][1000 genomes] |
rs12254745 | 0.82[CHB][hapmap] |
rs1249340 | 0.93[ASN][1000 genomes] |
rs1249347 | 0.82[ASN][1000 genomes] |
rs1249348 | 0.82[ASN][1000 genomes] |
rs1273097 | 0.82[ASN][1000 genomes] |
rs1457170 | 0.83[CEU][hapmap] |
rs1457171 | 0.83[CEU][hapmap] |
rs16928633 | 0.82[CHB][hapmap] |
rs16928768 | 0.83[CEU][hapmap] |
rs16928774 | 0.84[CEU][hapmap] |
rs1762188 | 0.86[ASN][1000 genomes] |
rs2100614 | 1.00[CHB][hapmap] |
rs2447629 | 0.82[ASN][1000 genomes] |
rs2797595 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2995539 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34827546 | 0.82[ASN][1000 genomes] |
rs7078271 | 0.82[CHB][hapmap] |
rs7100335 | 0.82[CHB][hapmap] |
rs72805627 | 0.82[ASN][1000 genomes] |
rs72805630 | 0.89[ASN][1000 genomes] |
rs72805631 | 0.93[ASN][1000 genomes] |
rs7898745 | 0.83[CEU][hapmap] |
rs7898888 | 1.00[JPT][hapmap] |
rs7911615 | 0.82[CHB][hapmap] |
rs7913814 | 0.83[CEU][hapmap] |
rs7916525 | 0.82[CHB][hapmap] |
rs811496 | 0.86[ASN][1000 genomes] |
rs813081 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv917149 | chr10:28018919-28688694 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1041555 | chr10:28419399-29304934 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
3 | nsv1037863 | chr10:28419399-29378871 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
4 | nsv540521 | chr10:28419399-29378871 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
5 | nsv1044938 | chr10:28601993-28659440 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:28626400-28631600 | Weak transcription | Primary monocytes fromperipheralblood | blood |
2 | chr10:28626400-28631800 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
3 | chr10:28628200-28630000 | Enhancers | Placenta | Placenta |
4 | chr10:28629000-28632800 | Weak transcription | HepG2 | liver |