Variant report

Variant	rs3020142
Chromosome Location	chr8:117904886-117904887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10093705	0.83[LWK][hapmap]
rs10109228	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10113111	1.00[YRI][hapmap]
rs10282816	0.94[ASN][1000 genomes]
rs12543129	0.94[ASN][1000 genomes]
rs12548885	0.93[ASN][1000 genomes]
rs12548895	0.94[ASN][1000 genomes]
rs1348797	1.00[ASN][1000 genomes]
rs14795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16888870	0.94[ASN][1000 genomes]
rs16888877	0.82[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16889060	0.83[LWK][hapmap]
rs2241981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2241982	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs2289937	0.82[MEX][hapmap]
rs28435805	0.81[AFR][1000 genomes]
rs2921754	0.92[ASN][1000 genomes]
rs2921756	0.97[ASN][1000 genomes]
rs2921757	0.97[ASN][1000 genomes]
rs2921758	0.97[ASN][1000 genomes]
rs2921770	1.00[ASN][1000 genomes]
rs2921771	1.00[ASN][1000 genomes]
rs2921772	1.00[ASN][1000 genomes]
rs2921773	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2921774	1.00[ASN][1000 genomes]
rs2921775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2921776	1.00[ASN][1000 genomes]
rs2921777	1.00[ASN][1000 genomes]
rs2921778	1.00[ASN][1000 genomes]
rs2921779	1.00[ASN][1000 genomes]
rs2921780	1.00[ASN][1000 genomes]
rs2921781	1.00[ASN][1000 genomes]
rs2921782	1.00[ASN][1000 genomes]
rs2921783	1.00[ASN][1000 genomes]
rs2921784	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2921785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2921786	1.00[ASN][1000 genomes]
rs2921787	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs2921788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2921789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2921790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2921791	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs3020109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3020111	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020118	1.00[ASN][1000 genomes]
rs3020123	1.00[MEX][hapmap]
rs3020124	1.00[ASN][1000 genomes]
rs3020125	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020126	1.00[ASN][1000 genomes]
rs3020128	1.00[ASN][1000 genomes]
rs3020130	1.00[ASN][1000 genomes]
rs3020131	1.00[ASN][1000 genomes]
rs3020133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3020134	1.00[ASN][1000 genomes]
rs3020135	0.97[ASN][1000 genomes]
rs3020136	1.00[ASN][1000 genomes]
rs3020138	1.00[ASN][1000 genomes]
rs3020139	1.00[ASN][1000 genomes]
rs3020140	1.00[ASN][1000 genomes]
rs3020174	0.92[JPT][hapmap]
rs3020181	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35189908	0.84[ASN][1000 genomes]
rs56095633	0.94[ASN][1000 genomes]
rs57202151	0.94[ASN][1000 genomes]
rs57809926	0.86[AFR][1000 genomes]
rs60764187	0.86[AFR][1000 genomes]
rs6996153	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs7014462	0.86[AFR][1000 genomes]
rs73308296	0.91[ASN][1000 genomes]
rs73703432	0.83[AFR][1000 genomes]
rs7817659	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7821544	0.89[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117903200-117905800	Weak transcription	NHLF	lung
2	chr8:117904800-117906000	Enhancers	Hela-S3	cervix

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