Variant report
| Variant | rs3020587 |
|---|---|
| Chromosome Location | chr4:26496828-26496829 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10005675 | 1.00[CEU][hapmap] |
| rs11944224 | 0.83[EUR][1000 genomes] |
| rs12500365 | 1.00[EUR][1000 genomes] |
| rs12500372 | 1.00[EUR][1000 genomes] |
| rs16878270 | 1.00[CEU][hapmap] |
| rs2725323 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2725324 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2854031 | 0.86[EUR][1000 genomes] |
| rs2854036 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2854037 | 0.86[EUR][1000 genomes] |
| rs28584998 | 0.83[EUR][1000 genomes] |
| rs2968718 | 0.86[EUR][1000 genomes] |
| rs3020586 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3020588 | 0.86[EUR][1000 genomes] |
| rs3020591 | 0.86[EUR][1000 genomes] |
| rs3109845 | 0.86[EUR][1000 genomes] |
| rs3111710 | 0.86[EUR][1000 genomes] |
| rs3111711 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3111712 | 0.86[EUR][1000 genomes] |
| rs3113011 | 0.86[EUR][1000 genomes] |
| rs3113013 | 0.86[EUR][1000 genomes] |
| rs34106842 | 0.83[EUR][1000 genomes] |
| rs56174986 | 1.00[EUR][1000 genomes] |
| rs56285756 | 1.00[EUR][1000 genomes] |
| rs6854444 | 1.00[CEU][hapmap] |
| rs73113354 | 0.83[EUR][1000 genomes] |
| rs7684003 | 1.00[CEU][hapmap] |
| rs7697476 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs953324 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762417 | chr4:26491768-26576800 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:26492000-26504200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
