Variant report

Variant	rs953324
Chromosome Location	chr4:26302190-26302191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26301899..26303918-chr4:26305845..26308033,2	K562	blood:
2	chr4:26295031..26297895-chr4:26300560..26302361,2	K562	blood:
3	chr4:26297878..26299553-chr4:26301719..26304155,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10005675	0.83[EUR][1000 genomes]
rs10012023	0.83[EUR][1000 genomes]
rs11944224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12500365	0.83[EUR][1000 genomes]
rs12500372	0.83[EUR][1000 genomes]
rs12505980	0.83[EUR][1000 genomes]
rs12512565	0.83[EUR][1000 genomes]
rs2725323	0.83[EUR][1000 genomes]
rs2725324	0.83[EUR][1000 genomes]
rs28521495	0.83[EUR][1000 genomes]
rs2854036	0.83[EUR][1000 genomes]
rs28584998	1.00[EUR][1000 genomes]
rs3020586	0.83[EUR][1000 genomes]
rs3020587	0.83[EUR][1000 genomes]
rs3111711	0.83[EUR][1000 genomes]
rs34106842	1.00[EUR][1000 genomes]
rs56174986	0.83[EUR][1000 genomes]
rs56285756	0.83[EUR][1000 genomes]
rs6835386	0.83[EUR][1000 genomes]
rs6854444	0.83[EUR][1000 genomes]
rs73113354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7684003	0.83[EUR][1000 genomes]
rs7697476	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26297400-26304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:26297600-26302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:26298800-26302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:26300400-26302200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:26300400-26303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:26300400-26304000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:26300600-26302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:26300600-26302600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:26300600-26302800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:26300600-26302800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:26300600-26304600	Weak transcription	HSMMtube	muscle
12	chr4:26300800-26302200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:26300800-26302400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:26300800-26302400	Weak transcription	NHLF	lung
15	chr4:26301200-26302200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:26301400-26302400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:26301400-26302400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:26301400-26303000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:26301400-26304600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:26301600-26302800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:26301600-26302800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:26301600-26303200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:26301600-26305200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:26301800-26302600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr4:26301800-26302800	Enhancers	Fetal Lung	lung
27	chr4:26301800-26304000	Weak transcription	GM12878-XiMat	blood
28	chr4:26302000-26302200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr4:26302000-26302800	Enhancers	NHDF-Ad	bronchial

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