Variant report

Variant	rs11944224
Chromosome Location	chr4:26300912-26300913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26295031..26297895-chr4:26300560..26302361,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10005675	0.83[EUR][1000 genomes]
rs10012023	0.83[EUR][1000 genomes]
rs12500365	0.83[EUR][1000 genomes]
rs12500372	0.83[EUR][1000 genomes]
rs12505980	0.83[EUR][1000 genomes]
rs12512565	0.83[EUR][1000 genomes]
rs2725323	0.83[EUR][1000 genomes]
rs2725324	0.83[EUR][1000 genomes]
rs28521495	0.83[EUR][1000 genomes]
rs2854036	0.83[EUR][1000 genomes]
rs28584998	1.00[EUR][1000 genomes]
rs3020586	0.83[EUR][1000 genomes]
rs3020587	0.83[EUR][1000 genomes]
rs3111711	0.83[EUR][1000 genomes]
rs34106842	1.00[EUR][1000 genomes]
rs56174986	0.83[EUR][1000 genomes]
rs56285756	0.83[EUR][1000 genomes]
rs6835386	0.83[EUR][1000 genomes]
rs6854444	0.83[EUR][1000 genomes]
rs73113354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7684003	0.83[EUR][1000 genomes]
rs7697476	0.83[EUR][1000 genomes]
rs953324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26297400-26304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:26297600-26302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:26298800-26302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:26299000-26301400	Enhancers	Fetal Lung	lung
5	chr4:26299200-26301600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:26299600-26301400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:26300000-26301000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:26300200-26301600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:26300400-26301000	Enhancers	GM12878-XiMat	blood
10	chr4:26300400-26301400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:26300400-26301400	Weak transcription	Small Intestine	intestine
12	chr4:26300400-26302200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:26300400-26303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:26300400-26304000	Weak transcription	Adipose Nuclei	Adipose
15	chr4:26300600-26301200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr4:26300600-26301600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr4:26300600-26301800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:26300600-26302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:26300600-26302600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:26300600-26302800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:26300600-26302800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:26300600-26304600	Weak transcription	HSMMtube	muscle
23	chr4:26300800-26301000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:26300800-26301400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:26300800-26301400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:26300800-26301600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr4:26300800-26302000	Weak transcription	NHDF-Ad	bronchial
28	chr4:26300800-26302200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:26300800-26302400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:26300800-26302400	Weak transcription	NHLF	lung

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