Variant report

Variant	rs308603
Chromosome Location	chr13:62760607-62760608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061126	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1752812	0.85[EUR][1000 genomes]
rs1887693	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs191071	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs308535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs308573	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap]
rs308575	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs308621	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs308626	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs308632	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3118813	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118815	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118818	0.86[EUR][1000 genomes]
rs3118820	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3118821	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3118826	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118828	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3118829	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118830	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128050	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128052	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128056	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4334178	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs442612	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4491382	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7139822	0.82[CHB][hapmap]
rs728545	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7323089	0.83[CHB][hapmap]
rs950159	0.83[CHB][hapmap]
rs9528503	0.86[CHB][hapmap]
rs9539462	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62759400-62761000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:62759600-62760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:62759600-62761000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:62759800-62760800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:62759800-62761200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:62760000-62761000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:62760600-62761200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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