Variant report
| Variant | rs3118818 |
|---|---|
| Chromosome Location | chr13:62826873-62826874 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17061126 | 0.89[EUR][1000 genomes] |
| rs1887693 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs191071 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs308535 | 0.87[EUR][1000 genomes] |
| rs308575 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs308603 | 0.86[EUR][1000 genomes] |
| rs308621 | 0.85[EUR][1000 genomes] |
| rs308626 | 0.85[EUR][1000 genomes] |
| rs308632 | 0.85[EUR][1000 genomes] |
| rs3118813 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3118815 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3118820 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3118821 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3118822 | 0.88[EUR][1000 genomes] |
| rs3118826 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3118828 | 0.87[EUR][1000 genomes] |
| rs3118829 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3118830 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3128050 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3128052 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3128056 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4334178 | 0.90[EUR][1000 genomes] |
| rs442612 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4491382 | 0.90[EUR][1000 genomes] |
| rs728545 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv900257 | chr13:62782367-62907090 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv561893 | chr13:62807570-62885877 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62825200-62832600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
