Variant report

Variant	rs308621
Chromosome Location	chr13:62748237-62748238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061126	0.97[EUR][1000 genomes]
rs1752812	0.84[EUR][1000 genomes]
rs1887693	0.95[EUR][1000 genomes]
rs191071	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs308535	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs308573	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs308575	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs308603	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs308626	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308632	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118813	0.95[EUR][1000 genomes]
rs3118815	0.95[EUR][1000 genomes]
rs3118818	0.85[EUR][1000 genomes]
rs3118820	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3118821	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3118822	0.91[EUR][1000 genomes]
rs3118826	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3118828	0.93[EUR][1000 genomes]
rs3118829	0.96[EUR][1000 genomes]
rs3118830	0.95[EUR][1000 genomes]
rs3128050	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3128052	0.95[EUR][1000 genomes]
rs3128056	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4334178	0.95[EUR][1000 genomes]
rs442612	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4491382	0.95[EUR][1000 genomes]
rs7139822	0.82[CHB][hapmap]
rs728545	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7323089	0.82[CHB][hapmap]
rs950159	0.82[CHB][hapmap]
rs9528503	0.85[CHB][hapmap]
rs9539462	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62748000-62748400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:62748000-62748600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:62748200-62748400	Enhancers	Gastric	stomach

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