Variant report
| Variant | rs308626 |
|---|---|
| Chromosome Location | chr13:62746393-62746394 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs17061126 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1752812 | 0.84[EUR][1000 genomes] |
| rs1887693 | 0.95[EUR][1000 genomes] |
| rs191071 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs308535 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs308575 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs308603 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs308621 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs308632 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3118813 | 0.95[EUR][1000 genomes] |
| rs3118815 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3118818 | 0.85[EUR][1000 genomes] |
| rs3118820 | 0.91[EUR][1000 genomes] |
| rs3118821 | 0.95[EUR][1000 genomes] |
| rs3118822 | 0.91[EUR][1000 genomes] |
| rs3118826 | 0.94[EUR][1000 genomes] |
| rs3118828 | 0.93[EUR][1000 genomes] |
| rs3118829 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs3118830 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3128050 | 0.92[EUR][1000 genomes] |
| rs3128052 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3128056 | 0.95[EUR][1000 genomes] |
| rs4334178 | 0.95[EUR][1000 genomes] |
| rs442612 | 0.93[EUR][1000 genomes] |
| rs4491382 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs728545 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv832630 | chr13:62651865-62811428 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62741000-62748200 | Weak transcription | Gastric | stomach |
| 2 | chr13:62746200-62746600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
