Variant report

Variant	rs309311
Chromosome Location	chr2:7156947-7156948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7155706..7158054-chr2:7170057..7171880,2	MCF-7	breast:
2	chr2:7153739..7156212-chr2:7156438..7158208,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs309302	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs309304	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs309306	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs309307	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs309309	0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs309310	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs309324	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs365775	0.95[ASN][1000 genomes]
rs367107	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs380605	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs391109	0.92[ASN][1000 genomes]
rs392904	0.83[CHB][hapmap]
rs419970	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs420013	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs424271	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs434382	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs441241	0.95[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
6	chr2:7147200-7158600	Enhancers	Colon Smooth Muscle	Colon
7	chr2:7147400-7157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:7147400-7159200	Weak transcription	Thymus	Thymus
9	chr2:7148200-7159400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:7148800-7158000	Weak transcription	Brain Germinal Matrix	brain
12	chr2:7148800-7159200	Enhancers	Brain Substantia Nigra	brain
13	chr2:7148800-7160200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:7148800-7160800	Enhancers	Fetal Heart	heart
15	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:7149000-7157800	Enhancers	Brain Anterior Caudate	brain
17	chr2:7149200-7158200	Weak transcription	Fetal Intestine Small	intestine
18	chr2:7149200-7159200	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:7149200-7159400	Weak transcription	Placenta	Placenta
20	chr2:7149200-7160000	Weak transcription	Esophagus	oesophagus
21	chr2:7149200-7160400	Weak transcription	Lung	lung
22	chr2:7149200-7163800	Weak transcription	Gastric	stomach
23	chr2:7149400-7157000	Weak transcription	Colonic Mucosa	Colon
24	chr2:7150000-7157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:7150000-7159000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:7150600-7157000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:7150800-7157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr2:7151000-7159800	Weak transcription	Fetal Thymus	thymus
30	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:7151200-7157600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:7151200-7157800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:7151200-7160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:7152800-7157400	Enhancers	Rectal Smooth Muscle	rectum
37	chr2:7153000-7162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:7153600-7159000	Enhancers	Fetal Lung	lung
39	chr2:7153800-7158400	Enhancers	Fetal Stomach	stomach
40	chr2:7154000-7157400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:7154000-7159000	Enhancers	Fetal Brain Male	brain
42	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
43	chr2:7154000-7190200	Strong transcription	Dnd41	blood
44	chr2:7154200-7158000	Enhancers	Fetal Muscle Leg	muscle
45	chr2:7154200-7159200	Enhancers	Adipose Nuclei	Adipose
46	chr2:7154200-7160400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:7154400-7157000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:7154600-7157000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:7154600-7158200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:7154600-7158800	Enhancers	Fetal Brain Female	brain

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