Variant report

Variant	rs309302
Chromosome Location	chr2:7182177-7182178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7168490..7170213-chr2:7179643..7182255,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2460409	0.81[EUR][1000 genomes]
rs28293	0.81[EUR][1000 genomes]
rs309283	0.81[EUR][1000 genomes]
rs309284	0.81[EUR][1000 genomes]
rs309286	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs309293	0.81[EUR][1000 genomes]
rs309295	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs309304	0.85[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs309306	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs309307	0.91[JPT][hapmap]
rs309309	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.94[ASN][1000 genomes]
rs309310	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs309311	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs309324	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs365483	0.81[EUR][1000 genomes]
rs365775	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367107	0.91[JPT][hapmap]
rs380605	0.87[JPT][hapmap]
rs391109	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs419970	0.90[JPT][hapmap]
rs420013	0.91[JPT][hapmap]
rs424271	0.91[JPT][hapmap]
rs434382	0.85[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs441241	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56131622	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs89983	0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs309302	RNF144A	cis	parietal	SCAN
rs309302	RNF144A	cis	cerebellum	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
4	chr2:7154000-7190200	Strong transcription	Dnd41	blood
5	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:7164600-7182200	Weak transcription	Small Intestine	intestine
11	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:7167800-7182800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:7168000-7185400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr2:7169600-7184200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:7170800-7187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:7172200-7184200	Weak transcription	Gastric	stomach
19	chr2:7172200-7186400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:7172400-7184400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:7172600-7182200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr2:7173200-7183000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:7173400-7183600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:7173600-7184200	Weak transcription	Thymus	Thymus
26	chr2:7173600-7189200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:7173800-7188600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:7174200-7184600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr2:7175400-7187600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:7175600-7183400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:7175800-7182800	Strong transcription	Spleen	Spleen
33	chr2:7175800-7187400	Weak transcription	Fetal Intestine Small	intestine
34	chr2:7177800-7183400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:7177800-7184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:7178000-7182800	Strong transcription	Fetal Stomach	stomach
37	chr2:7178400-7183000	Strong transcription	Brain Anterior Caudate	brain
38	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
39	chr2:7178800-7182600	Weak transcription	Brain Angular Gyrus	brain
40	chr2:7178800-7182800	Strong transcription	Brain Substantia Nigra	brain
41	chr2:7179000-7183000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr2:7179200-7182600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:7179200-7183000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:7179400-7182200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:7179400-7182400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:7179600-7182400	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr2:7179600-7182800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr2:7179600-7182800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:7179600-7182800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:7179600-7182800	Strong transcription	Adipose Nuclei	Adipose

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