Variant report

Variant	rs309293
Chromosome Location	chr2:7189354-7189355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7187222..7190356-chr2:7196185..7198623,3	K562	blood:
2	chr2:7189264..7191532-chr2:7195160..7198127,2	MCF-7	breast:
3	chr2:7172047..7174209-chr2:7188220..7189879,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2460409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460410	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28293	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309263	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs309264	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs309268	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs309273	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs309276	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs309278	0.98[ASN][1000 genomes]
rs309283	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309284	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309286	0.93[EUR][1000 genomes]
rs309295	0.93[EUR][1000 genomes]
rs309302	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs309304	0.89[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes]
rs309306	0.83[JPT][hapmap]
rs309307	0.82[JPT][hapmap]
rs365775	0.81[EUR][1000 genomes]
rs367107	0.82[JPT][hapmap]
rs417248	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs419970	0.83[JPT][hapmap]
rs420013	0.82[JPT][hapmap]
rs424271	0.82[JPT][hapmap]
rs434382	0.89[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs441241	0.80[EUR][1000 genomes]
rs89983	0.93[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:7154000-7190200	Strong transcription	Dnd41	blood
3	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
8	chr2:7181800-7190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:7182000-7189800	Weak transcription	Brain Germinal Matrix	brain
10	chr2:7182000-7191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:7182000-7194000	Weak transcription	Ovary	ovary
12	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
14	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:7183000-7194000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:7184600-7194000	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:7184800-7189400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:7184800-7194200	Weak transcription	Fetal Brain Male	brain
21	chr2:7184800-7194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:7185200-7189400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:7185400-7193800	Weak transcription	Fetal Kidney	kidney
24	chr2:7186000-7194000	Weak transcription	Fetal Brain Female	brain
25	chr2:7186200-7194000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:7186400-7194000	Weak transcription	Brain Substantia Nigra	brain
27	chr2:7186600-7190800	Weak transcription	Fetal Stomach	stomach
28	chr2:7186600-7193800	Weak transcription	Brain Anterior Caudate	brain
29	chr2:7186600-7193800	Weak transcription	Brain Hippocampus Middle	brain
30	chr2:7186600-7193800	Weak transcription	Spleen	Spleen
31	chr2:7186600-7194000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:7186600-7197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:7186800-7190800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:7186800-7193800	Weak transcription	Pancreas	Pancrea
35	chr2:7188200-7189400	Enhancers	Lung	lung
36	chr2:7188200-7191400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:7188200-7192600	Weak transcription	Right Atrium	heart
38	chr2:7188200-7194800	Weak transcription	Thymus	Thymus
39	chr2:7188400-7190400	Weak transcription	Fetal Muscle Leg	muscle
40	chr2:7188400-7191200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr2:7188800-7189600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr2:7188800-7189600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:7188800-7190000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr2:7188800-7200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr2:7189000-7189600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr2:7189000-7193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:7189200-7189400	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr2:7189200-7189400	Strong transcription	Primary T cells from cord blood	blood
49	chr2:7189200-7190400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:7189200-7195800	Weak transcription	Primary hematopoietic stem cells	blood

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