Variant report

Variant	rs309283
Chromosome Location	chr2:7195431-7195432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7189264..7191532-chr2:7195160..7198127,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2460409	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2460410	0.84[EUR][1000 genomes]
rs28293	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309273	0.83[EUR][1000 genomes]
rs309276	0.83[EUR][1000 genomes]
rs309278	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs309284	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309286	0.93[EUR][1000 genomes]
rs309293	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309295	0.93[EUR][1000 genomes]
rs309302	0.81[EUR][1000 genomes]
rs365775	0.81[EUR][1000 genomes]
rs417248	0.83[EUR][1000 genomes]
rs441241	0.80[EUR][1000 genomes]
rs89983	0.93[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
4	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
6	chr2:7186600-7197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:7188800-7200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:7189200-7195800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:7189400-7203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:7191400-7200400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:7194000-7196600	Bivalent Enhancer	Primary B cells from cord blood	blood
13	chr2:7194000-7200000	Enhancers	Fetal Thymus	thymus
14	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
15	chr2:7194400-7202200	Weak transcription	Ovary	ovary
16	chr2:7194400-7210800	Weak transcription	Lung	lung
17	chr2:7194600-7198200	Weak transcription	Brain Substantia Nigra	brain
18	chr2:7194600-7201800	Weak transcription	Fetal Kidney	kidney
19	chr2:7194600-7206400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:7194800-7196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:7194800-7198000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:7194800-7202800	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:7195000-7197800	Enhancers	Primary T cells from cord blood	blood
24	chr2:7195000-7197800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr2:7195000-7198200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:7195200-7195800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:7195200-7197200	Enhancers	Dnd41	blood
29	chr2:7195200-7200200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr2:7195400-7196400	Weak transcription	Spleen	Spleen
31	chr2:7195400-7196600	Weak transcription	Thymus	Thymus
32	chr2:7195400-7198200	Enhancers	Primary T helper cells PMA-I stimulated	--

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