Variant report

Variant	rs28293
Chromosome Location	chr2:7195146-7195147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2460409	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2460410	0.84[EUR][1000 genomes]
rs309263	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309264	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309268	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309273	0.83[EUR][1000 genomes]
rs309276	0.83[EUR][1000 genomes]
rs309278	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs309283	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309284	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309286	0.93[EUR][1000 genomes]
rs309293	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309295	0.93[EUR][1000 genomes]
rs309302	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs309304	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs309306	0.81[JPT][hapmap]
rs309307	0.82[JPT][hapmap]
rs365775	0.81[EUR][1000 genomes]
rs367107	0.82[JPT][hapmap]
rs417248	0.83[EUR][1000 genomes]
rs419970	0.81[JPT][hapmap]
rs420013	0.82[JPT][hapmap]
rs424271	0.82[JPT][hapmap]
rs434382	0.89[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs441241	0.80[EUR][1000 genomes]
rs89983	0.93[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
5	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
7	chr2:7186600-7197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:7188800-7200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:7189200-7195800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:7189400-7203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:7191400-7200400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:7191600-7195400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:7194000-7196600	Bivalent Enhancer	Primary B cells from cord blood	blood
15	chr2:7194000-7200000	Enhancers	Fetal Thymus	thymus
16	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
17	chr2:7194400-7202200	Weak transcription	Ovary	ovary
18	chr2:7194400-7210800	Weak transcription	Lung	lung
19	chr2:7194600-7198200	Weak transcription	Brain Substantia Nigra	brain
20	chr2:7194600-7201800	Weak transcription	Fetal Kidney	kidney
21	chr2:7194600-7206400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:7194800-7195200	Genic enhancers	Dnd41	blood
23	chr2:7194800-7195400	Enhancers	Thymus	Thymus
24	chr2:7194800-7196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:7194800-7198000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr2:7194800-7202800	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:7195000-7195200	Enhancers	Primary B cells from peripheral blood	blood
28	chr2:7195000-7195200	Enhancers	Spleen	Spleen
29	chr2:7195000-7195400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:7195000-7197800	Enhancers	Primary T cells from cord blood	blood
31	chr2:7195000-7197800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr2:7195000-7198200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links