Variant report

Variant	rs420013
Chromosome Location	chr2:7161586-7161587
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7148867..7150372-chr2:7158852..7161810,2	MCF-7	breast:
2	chr2:7056636..7059579-chr2:7161161..7163816,2	MCF-7	breast:
3	chr2:7126650..7129012-chr2:7161153..7163325,2	K562	blood:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction
ENSG00000228203	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2924385	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs309300	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs309302	0.91[JPT][hapmap]
rs309304	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs309306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs309307	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309309	0.91[JPT][hapmap]
rs309310	0.91[JPT][hapmap]
rs309311	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs309324	0.89[JPT][hapmap]
rs365483	0.96[ASN][1000 genomes]
rs367107	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372346	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376348	0.82[AMR][1000 genomes]
rs380605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389323	0.96[ASN][1000 genomes]
rs392051	0.96[ASN][1000 genomes]
rs392904	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399101	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs419970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs424271	0.80[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs434382	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs435009	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs451503	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs771264	0.81[CEU][hapmap]
rs771268	0.81[CEU][hapmap]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
4	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:7149200-7163800	Weak transcription	Gastric	stomach
7	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:7153000-7162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
13	chr2:7154000-7190200	Strong transcription	Dnd41	blood
14	chr2:7154600-7163200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
16	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:7154800-7164800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:7155000-7164600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:7155000-7171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:7155200-7161600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:7155400-7162000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:7155400-7162600	Weak transcription	K562	blood
24	chr2:7155400-7162600	Weak transcription	NH-A	brain
25	chr2:7155600-7162800	Weak transcription	NHDF-Ad	bronchial
26	chr2:7155600-7163200	Weak transcription	Fetal Intestine Large	intestine
27	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr2:7155800-7164400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr2:7156000-7161800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:7156000-7168800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:7157000-7162000	Genic enhancers	Pancreas	Pancrea
32	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
34	chr2:7157200-7164400	Weak transcription	Colonic Mucosa	Colon
35	chr2:7157200-7169000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:7157400-7166000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:7157600-7165400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr2:7157800-7162400	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr2:7158000-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:7158000-7168400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr2:7158200-7162200	Strong transcription	Fetal Intestine Small	intestine
43	chr2:7158200-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:7158200-7173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr2:7158400-7164600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr2:7158400-7173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr2:7158600-7161600	Weak transcription	Psoas Muscle	Psoas
50	chr2:7158600-7164400	Weak transcription	H1 Cell Line	embryonic stem cell

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