Variant report

Variant	rs309300
Chromosome Location	chr2:7185181-7185182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7176590..7179422-chr2:7184639..7187139,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs309269	0.80[EUR][1000 genomes]
rs309270	0.80[EUR][1000 genomes]
rs309287	0.87[ASN][1000 genomes]
rs309288	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309289	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309290	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309291	0.85[AMR][1000 genomes]
rs309292	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309294	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309296	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs309297	0.80[AMR][1000 genomes]
rs309304	0.86[ASN][1000 genomes]
rs309306	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs309307	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs365483	0.81[ASN][1000 genomes]
rs367107	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs372346	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs380605	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs389323	0.85[ASN][1000 genomes]
rs392051	0.85[ASN][1000 genomes]
rs392904	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs399101	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs419970	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs420013	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs424271	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs434382	0.86[ASN][1000 genomes]
rs435009	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs451503	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:7154000-7190200	Strong transcription	Dnd41	blood
4	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:7168000-7185400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:7170800-7187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:7172200-7186400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:7173600-7189200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:7173800-7188600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:7175400-7187600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:7175800-7187400	Weak transcription	Fetal Intestine Small	intestine
20	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
21	chr2:7180200-7185200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:7180200-7188800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:7180400-7185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:7180600-7186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:7181000-7185400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:7181000-7185800	Weak transcription	Fetal Thymus	thymus
27	chr2:7181000-7186600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr2:7181000-7188600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:7181200-7185600	Weak transcription	Placenta	Placenta
30	chr2:7181600-7188200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:7181800-7185200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:7181800-7190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:7182000-7189800	Weak transcription	Brain Germinal Matrix	brain
34	chr2:7182000-7191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr2:7182000-7194000	Weak transcription	Ovary	ovary
36	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
38	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr2:7182800-7185200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:7182800-7185200	Weak transcription	Adipose Nuclei	Adipose
43	chr2:7182800-7185200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr2:7182800-7185200	Weak transcription	Fetal Stomach	stomach
45	chr2:7182800-7185200	Weak transcription	Spleen	Spleen
46	chr2:7182800-7185400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:7182800-7186800	Weak transcription	Fetal Lung	lung
48	chr2:7182800-7187800	Weak transcription	Brain Angular Gyrus	brain
49	chr2:7182800-7188000	Weak transcription	Left Ventricle	heart
50	chr2:7182800-7188000	Weak transcription	HepG2	liver

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