Variant report

Variant	rs367107
Chromosome Location	chr2:7171605-7171606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7057537..7060433-chr2:7171077..7173974,2	K562	blood:
2	chr2:7158767..7160822-chr2:7170212..7171959,2	MCF-7	breast:
3	chr2:7036994..7037830-chr2:7171566..7172215,2	MCF-7	breast:
4	chr2:7155706..7158054-chr2:7170057..7171880,2	MCF-7	breast:
5	chr2:7157710..7158566-chr2:7171490..7172653,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction
ENSG00000228203	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12477577	0.88[YRI][hapmap]
rs309288	0.80[AMR][1000 genomes]
rs309294	0.80[AMR][1000 genomes]
rs309296	0.81[AMR][1000 genomes]
rs309300	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs309302	0.91[JPT][hapmap]
rs309304	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs309306	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs309307	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs309309	0.91[JPT][hapmap]
rs309310	0.91[JPT][hapmap]
rs309311	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs309324	0.89[JPT][hapmap]
rs365483	0.96[ASN][1000 genomes]
rs372346	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389323	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs392051	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs392904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399101	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419970	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420013	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs424271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs434382	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs435009	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs451503	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
5	chr2:7154000-7190200	Strong transcription	Dnd41	blood
6	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
7	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
12	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:7158200-7173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:7158400-7173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:7158600-7173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:7159000-7181000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:7159600-7180600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:7163200-7177400	Weak transcription	Fetal Brain Male	brain
22	chr2:7164000-7177600	Weak transcription	NHDF-Ad	bronchial
23	chr2:7164000-7178000	Weak transcription	K562	blood
24	chr2:7164600-7182200	Weak transcription	Small Intestine	intestine
25	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:7165400-7179200	Weak transcription	Colonic Mucosa	Colon
27	chr2:7166800-7173600	Strong transcription	Thymus	Thymus
28	chr2:7166800-7176400	Strong transcription	Brain Germinal Matrix	brain
29	chr2:7166800-7177800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:7167000-7173800	Strong transcription	Fetal Thymus	thymus
31	chr2:7167000-7177800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:7167400-7171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:7167400-7176600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:7167800-7172800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:7167800-7173800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:7167800-7175600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr2:7167800-7182800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:7168000-7180000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:7168000-7185400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr2:7168200-7173800	Genic enhancers	Pancreas	Pancrea
42	chr2:7168400-7172000	Genic enhancers	Right Ventricle	heart
43	chr2:7168400-7174200	Strong transcription	Ovary	ovary
44	chr2:7168400-7177000	Strong transcription	Fetal Brain Female	brain
45	chr2:7168600-7171800	Genic enhancers	Brain Inferior Temporal Lobe	brain
46	chr2:7168600-7175800	Genic enhancers	Spleen	Spleen
47	chr2:7168800-7174000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:7168800-7176400	Strong transcription	Fetal Stomach	stomach
49	chr2:7169600-7184200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:7169800-7173000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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