Variant report

Variant	rs309286
Chromosome Location	chr2:7193135-7193136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10445713	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2460409	0.93[EUR][1000 genomes]
rs28293	0.93[EUR][1000 genomes]
rs309263	0.88[EUR][1000 genomes]
rs309264	0.88[EUR][1000 genomes]
rs309268	0.91[EUR][1000 genomes]
rs309283	0.93[EUR][1000 genomes]
rs309284	0.93[EUR][1000 genomes]
rs309293	0.93[EUR][1000 genomes]
rs309295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309302	0.92[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs309309	0.81[JPT][hapmap]
rs309310	0.81[JPT][hapmap]
rs309311	0.81[JPT][hapmap]
rs309324	0.81[JPT][hapmap]
rs365775	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs391109	0.86[EUR][1000 genomes]
rs441241	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4669130	0.81[EUR][1000 genomes]
rs56131622	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs89983	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
5	chr2:7182000-7194000	Weak transcription	Ovary	ovary
6	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
8	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:7183000-7194000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:7184600-7194000	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:7184800-7194200	Weak transcription	Fetal Brain Male	brain
14	chr2:7184800-7194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr2:7185400-7193800	Weak transcription	Fetal Kidney	kidney
16	chr2:7186000-7194000	Weak transcription	Fetal Brain Female	brain
17	chr2:7186200-7194000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:7186400-7194000	Weak transcription	Brain Substantia Nigra	brain
19	chr2:7186600-7193800	Weak transcription	Brain Anterior Caudate	brain
20	chr2:7186600-7193800	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:7186600-7193800	Weak transcription	Spleen	Spleen
22	chr2:7186600-7194000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:7186600-7197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:7186800-7193800	Weak transcription	Pancreas	Pancrea
25	chr2:7188200-7194800	Weak transcription	Thymus	Thymus
26	chr2:7188800-7200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:7189000-7193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:7189200-7195800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr2:7189400-7194000	Weak transcription	Lung	lung
30	chr2:7189400-7195000	Weak transcription	Primary T cells from cord blood	blood
31	chr2:7189400-7203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:7190200-7193800	Weak transcription	Dnd41	blood
34	chr2:7191400-7193200	Enhancers	Primary B cells from peripheral blood	blood
35	chr2:7191400-7200400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:7191600-7195400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:7192400-7193200	Enhancers	Fetal Stomach	stomach
38	chr2:7192800-7194000	Enhancers	Primary B cells from cord blood	blood
39	chr2:7193000-7193400	Weak transcription	Fetal Muscle Leg	muscle

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