Variant report

Variant	rs3098726
Chromosome Location	chr8:95499295-95499296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs2450579	0.85[GIH][hapmap];0.86[MEX][hapmap]
rs2470736	0.95[GIH][hapmap];0.86[MEX][hapmap]
rs2470737	0.95[GIH][hapmap]
rs2470743	0.95[GIH][hapmap]
rs3096602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs3096605	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs3098713	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3098717	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3098720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3098723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3098724	0.81[CHB][hapmap]
rs3099402	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3099408	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3099409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3099411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3099415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[EUR][1000 genomes]
rs3099417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099419	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3099421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[EUR][1000 genomes]
rs3099423	0.93[EUR][1000 genomes]
rs3099424	0.93[EUR][1000 genomes]
rs3102843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102844	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3102849	0.93[EUR][1000 genomes]
rs3102858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102863	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3102864	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3102866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3102868	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3102869	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102876	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133597	0.93[EUR][1000 genomes]
rs3133598	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.93[EUR][1000 genomes]
rs3133599	0.93[EUR][1000 genomes]
rs3133606	0.88[EUR][1000 genomes]
rs3133607	0.81[EUR][1000 genomes]
rs3133612	0.83[EUR][1000 genomes]
rs3133614	0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs3133623	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3133624	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs3133638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3133643	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3133644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs3133647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3133650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3133652	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133653	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133661	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34432191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36040483	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs882521	0.95[GIH][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95487800-95500000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:95487800-95500200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:95488000-95499400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:95488000-95499400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:95488000-95499400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:95488000-95499400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:95488000-95499400	Weak transcription	Brain Germinal Matrix	brain
8	chr8:95488000-95499400	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:95488000-95499400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:95488000-95499400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:95488000-95499400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:95488000-95499600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:95488000-95499600	Weak transcription	Liver	Liver
14	chr8:95488000-95499600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:95488000-95499600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:95488000-95499600	Weak transcription	Osteobl	bone
17	chr8:95488000-95499800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:95488000-95499800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:95488000-95500000	Weak transcription	GM12878-XiMat	blood
20	chr8:95488000-95500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr8:95488000-95500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:95488000-95500400	Weak transcription	Primary B cells from cord blood	blood
23	chr8:95488000-95500400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:95488000-95500400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:95488000-95500400	Weak transcription	HMEC	breast
26	chr8:95488000-95500400	Weak transcription	HUVEC	blood vessel
27	chr8:95488000-95501800	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:95488000-95502200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr8:95488000-95503600	Weak transcription	NHEK	skin
30	chr8:95488200-95499400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:95488200-95500200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:95488200-95501000	Weak transcription	Hela-S3	cervix
33	chr8:95488200-95507800	Weak transcription	NHLF	lung
34	chr8:95491200-95499400	Weak transcription	Placenta	Placenta
35	chr8:95491200-95499400	Weak transcription	HSMM	muscle
36	chr8:95492000-95500400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr8:95492200-95503000	Weak transcription	HepG2	liver
38	chr8:95492600-95499600	Weak transcription	Brain Substantia Nigra	brain
39	chr8:95493000-95549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr8:95493200-95500200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:95493400-95499400	Weak transcription	Left Ventricle	heart
42	chr8:95493400-95503600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:95494000-95499400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr8:95494200-95502000	Weak transcription	Right Ventricle	heart
45	chr8:95495000-95500400	Weak transcription	Fetal Intestine Large	intestine
46	chr8:95495000-95503000	Weak transcription	Aorta	Aorta
47	chr8:95495200-95501000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:95495200-95538400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:95495600-95500400	Weak transcription	Fetal Kidney	kidney
50	chr8:95495600-95541000	Weak transcription	Esophagus	oesophagus

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