Variant report

Variant	rs3133612
Chromosome Location	chr8:95614978-95614979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95612123..95615223-chr8:95651605..95655028,4	MCF-7	breast:
2	chr8:95608889..95612825-chr8:95614406..95617415,3	K562	blood:
3	chr8:95611247..95612825-chr8:95613494..95615906,2	K562	blood:

Variant related genes	Relation type
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10109309	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3096602	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3096605	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3098713	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3098717	0.83[EUR][1000 genomes]
rs3098720	0.83[EUR][1000 genomes]
rs3098723	0.83[EUR][1000 genomes]
rs3098726	0.83[EUR][1000 genomes]
rs3099408	0.83[EUR][1000 genomes]
rs3099409	0.83[EUR][1000 genomes]
rs3099411	0.83[EUR][1000 genomes]
rs3099415	0.83[EUR][1000 genomes]
rs3099416	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3099417	0.83[EUR][1000 genomes]
rs3099419	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3099421	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099423	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099424	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3102843	0.83[EUR][1000 genomes]
rs3102844	0.83[EUR][1000 genomes]
rs3102849	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102858	0.83[EUR][1000 genomes]
rs3102863	0.83[EUR][1000 genomes]
rs3102864	0.83[EUR][1000 genomes]
rs3102866	0.83[EUR][1000 genomes]
rs3102868	0.83[EUR][1000 genomes]
rs3102869	0.83[EUR][1000 genomes]
rs3102870	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3102871	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102872	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102873	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102876	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133597	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3133598	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3133599	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3133606	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133607	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133613	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3133614	0.86[ASN][1000 genomes]
rs3133616	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133617	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133623	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133624	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133638	0.83[EUR][1000 genomes]
rs3133642	0.83[EUR][1000 genomes]
rs3133643	0.83[EUR][1000 genomes]
rs3133647	0.83[EUR][1000 genomes]
rs3133650	0.83[EUR][1000 genomes]
rs3133652	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133653	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3133661	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34432191	0.83[EUR][1000 genomes]
rs36040483	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95612400-95619400	Weak transcription	Right Atrium	heart
2	chr8:95613200-95615000	Enhancers	NHEK	skin
3	chr8:95613400-95615200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:95614800-95615000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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